MmuINT0045347 @ mm10
Intron Retention
Gene
ENSMUSG00000028713 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:MGI Symbol;Acc:MGI:103225]
Coordinates
chr4:115641846-115647723:-
Coord C1 exon
chr4:115647508-115647723
Coord A exon
chr4:115641988-115647507
Coord C2 exon
chr4:115641846-115641987
Length
5520 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
GTCTTCTGTTATTGTTTCAGATC
3' ss Score
11.65
Exon sequences
Seq C1 exon
GGAGGCAGTTGGAGCCTGGGTCCTGCGAGTTTAGCCATGGCGCTCAGCTTTCTCTCTCCAAGCCTTTCCCGCCTCGGCCTGTGGGCTTCTGTAGTGATCCTGATGGTAACCGTCCTGAAGCTCCTCAGCCTGCTGTTTCGGAGGCAGAAGCTGGCCAGGGCTTTGGACAGCTTCCCAGGGCCCCCCAAGCACTGGCTTTTTGGTCATGCCCTTGAG
Seq A exon
GTATGTGGGGATATGGGAGATGCCCTTGAGGTATGTGGGGATATGGGAGATGCCCTTGAGGTATGTGGGGATATGGGAGATGCCCTTGAGGTATGTGGGGATATGGGAGATGCCCTTGAGGTATGTGGGGATATGGGAGATGCCCTTGAGGTATGTGGGGATATGGGAGATGCCCTTGAGGTATGTGGGGATATGGGGGAGTTGGGGAAGGGAGGTCATCAATTTAGACAAGAGGCTGAGGCCTGGAACCACGGCTCCTAGTCAGCTTTCCCACCCCTGACTTTCAAGCTGGCTTCAGAAGCAACACAACATTTCAAAGTGGCAGCTTAAGAAAGCCTGAGATGCGTTCCATTCATTCATTCATTCATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTGGTTTTTCGGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCGCGCCACCACGTCAGGCCCATTATTTTGAGGAACAGAATGCAAGTCGGTGTGGAGGCTTGTTGATAGATCACACCCGGGAGAAATTACATCCTCAAAGTTTGACCCGACAACTAGGCAGTCACGAAGTGTCCTGCTCTATGCAGTGTAAAGATTGCTGGTGACCAAGAGGACGTTCAAAGTAAAAACAGAGGAAAGTGCTGTCTTCTGATGCATCCCAGCGTGTCTGAGAGGTTGGTACCCCCAAAGCTGGGAGGTACCTTTTCTCTTTCCTTTGTCTGGCTGAGGAACTCTGGCGGTTCCCCAGGTTCAGGTCCTGGTTGGGTCTCCTGTTAAGGCAGCTCAGGAGGGGTTCACCTTAGCATCCAGTCTCAGGAACTCCTCTTGTCTTGGGGATCCAGACCTTCTAAACACAAGATAAGGGTTTAGAGTCAGGCAGGAGAAACAGATCCTCCACACACCTCCCCAAACATCTGGAGACTAACATTTTAGATTGGAACTAGGACCCCGAGACTAAGTCTTCTGGTGTGCTTTGAGCTACAGGCAGGTTTGGGAGCCCAGGCATGGATGTCATGGATGAAGTCTCAAAAGCGGGTGTCATTCTTTCTACCTTTTTCTTCTTCCATCTGGGGAATTGACACTGGAAATGAACTTGGTCTCTAATCTGATTTTTGCTCCTTACAGATAACTTGTTGGGGATAACCTATGAACTTACCTGTACCATTGAACACTATGGGTGGGAGGAGGATGTCTTGGGTGACACTAGAGCATTCTCTGCTCCCAGGAGGATGAAGGTGCTTCCCCAGGGGTCCACTTCTGCTCCATTCTTTTAATTTTAGCATCTTACAGCTTTTCTACTAGTTTGAGACTTTTGGAGAGTGGCGGACTTGGTCTGATTTATTCTCATGCCCTCAGGATACAGCACAAAACTTGGGTTAGTACAGGCATGCCTGAATGAATGAACGCAAAAGGCTAGATTGTAGGGAGAGAGGTCCACAGAAGATGGAGAATGGTGGGGAAGGGGGGGTGAGGGATCAGGATGACTTGGGAGGGTCTCTGCCAAGTGTGGAAGGGTGAGGTCACATTCTAAAAGAGCATGAGAGGCATTTGGGAGGACTTTTAATTCCCCTTTCTCTGTGCCCCCTTTGTGCTTACCTGCCTTTCTCAGGATTGGGGAAGTTAGTCCTCAAGCAATGGGCTTTAATAGCATATAGTCCATTCTCTCACAACTCCATGCCAGAGCTGTCTGCTCTCTTCTTCCCAGGTGTTCTATTCTATCTTGAAAGTACACAGAGAGCCTGGAACACAGCCTAGCTTCAGCTTCTTCATGCCAGTATAACTATCTGAAGGGCATTGGCTTGATACCAGGAGGCCATGCCAAGATTGGAGTGGGAAGCTGATCTTGAGGGCTATAAAAGTTTCCTAGGGAACCAACCACAGGCACAGTGCCATTGCATTCCTCCAGGACTTGGTACCTCTGCATGGTTGGATTCACACCTCAACCTGAGAATGTGAAGGGCAGGATGTGGATTTGTTTCCCTAGTGTGAGAAAAGATGGGGAAGTTGAGATTCAAAGGGGTTAAGGTGTCCACTTAAGGACACATATTGGTTCAGGATTCAAGTCAAAGCTGAACTAGGGACTCCTCATGCATTCTGGGCCCTAATTGTCTTGTAAGTGGTAGGAAGAGTACTTTAAAGGGTCAGGATGACTGACACTAGACACACAAGAACACCAAGGGATAGCCCGCGCAGAAGGAGAGCTACTAAGGTGATCCCCACAAGACTTCCCTGAGTGGCCTCAGAGGGCACTACACAGACCCATAGGAAGGGTTCCTGGCAGGTGCCATTCAGTTCAGGGACCGAGAGATCTTGTTAAGAATCTGGACAGTCCAAAAATAACTGAACTGAGAAGGAGTTTAGGTATCATACTGGAGATACCTGAGCTCTTGTTTTGGGACCTAGCATGTTGTGGAAGAGGAGTCCCTGTCTTCTACCCCCAGTTGTTGGTGTTTCTAACCATTCACCTCTGTCTCATCTGTAGATGATCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAACCAGATATTGGGTGTCTTCTATGGCTCTCTACCTTACATATTCATTTTTGAGAAGATTAGAAAACTCACTTAATTTTATTTATATGGGTTTTTTTCTTCATATACACCTGTGTATCACATGTGAGTCTGGTGCTCACAGAGGCCAGAAGAGGGTCTCAGGGACCCTGGACCTTGCAAATGGTTGTGAGCCACTATGTGGGTGATGGGAACAGAACCTAGATCCTCTGCAAGAGCAGGCAGTACTTTTAACTGCAGAGCCAACAATCCAGTCTCTTAGAAAGATTTTTAAGAATTAAACTGCCTAAGTGTGTGTTGGTGTGTATGTGGGTGTAGTGTGGGGATGTGCACATGTGAGTGTAAGTGCTGTCAGAGTTTAGAAAAGGGTGTCAAATTCCCAGGAGTTAGATTGCAGGAGGTTATAGGCAGACCCCTGTGGGTGCTGGGAGCTGTGTCTTTCACAAGAGCGGTATAGCTCTTAACCGCTGATCAGTGTTTCAATATTTATTGGTTATTTTGTTTATTTACATTTCTAATGTTGTCCCCCCTCCCAGTTTTCGCCCCTGAAAACCCTCCACTCCACTCCCTCCTCCTGCCTCCATGAGGGTGCTTCCCACCCCACTCCTGTCCCTGTGCCCTACACAGTGGCATCAAGCCTTCTCAGGACCCAGGGCTTCCCCTCCTTTTGATGCCAGACAAGGCCATCCTCTGCCACATATACAGCTGGAGCCATGGGTATTCTTTGGTGGTTTAGTTCCTGGGAGTTCGGGGGGGGGGGGGGGAAGGGTCTGGTTGGTTGATATTCTTGTTCCTCCCATGGGGTTGCAAACCCCTTTGGTTCCTTCACTCCTTCCCCTAACTCCTCCATTGGGGTTCCCATGTTCACTCCTATGAATATCTCACTTTTTTAGAGAAGATCTCTTACTAAACCTGGAGCTCTCCATTTTGGAAACACTGGCAGGTCAGCAAGCCCCTCCCTCCATCTTTCTATCTCACCCTTGGCTTACAGATTCTAGGCAGGTCAGCAAGCCCCTTCCTTCATCTTTCTATCTCACCCTTGGCTTACAGATGCTAACCACCATGTCTGTCTTTTAAATAGAGGGCTGGAGTTCAAACTCAGGTCTTCATGCCTGGGGAGCAAGTCCTTCTCCCTACTGAGCCTTCTCCCCACGCAGATACATTTTATCCTCAAGCAGTCCCCAAGAGCACTGTAGCTGCCTCACACTGGAGAAGCTGGGAATTTGCTCCTTGGACACTGTCCAACTGATCTTTAGATCCATTAGGGAATGGCCTGAGTGGATTTGTTGACAGGAAGGAAGCTCAGTCACGATTTCTGGTTGGCTCAATCATGTGAGATAGTTCCGTTGGCCTTTGAATGCACTGTTCCCACTTATGAAAGGTCATGGTTCAATTAAGCTTCATTGATGTCCCATTCTGATCTGATTCCCGAAGTGTAACTTACTCAGACTATTGGAGAGCAGTCCTTCCCATTGCTCATTGCTGCTGGGTTTAACACTGGTGCAAATGAAGGGTTGGGGCAGGTTGCTCAGGAGCTGGGTGCAGTGACTTATCTTTATGCCCTGTTTTCCTGTTTCCTTCCTTTGTGAGAAAGCAATCTGTCCCAGATCTGATAGTGGTAGCCTTGTTTAGGGCACTAGAGGATAAATCTGAGGCATTTGTTGTATAACTCAGAGAAGTTTGCCAGCAATCACATGACCCATACAAGAACAATGTTGTCAGCAGTCATTTTGAGGGATTGCAGCTGCAAAACGGGTCCAGATGCTGAGAGCTGTCTTCACTCTAATGGGCTCCTGGGGACAATCAGGGCTCATAGAAGAAGGCTGTCTCTAGGGAGGCCATGGCAGTCTGTGACTGAGGCCAAGTTCTCATGTCTATGGTTGGGATGCTACAGAAGGGCACAGGAATGCTGCCTGGAGCTGGGAAAGACAGGAGCAGAATGTAAGGAACCCCAAGCTGCGGAACAACCCATTCAAGAGTATCCAACTAAGAAGATTTAATCAAATTAAGTAATTAATTAAGAGTAATTAATCCAATTAAGAGTATCAGAGTTCTTTACTTTGAGTGGCAACCAATATTAGGTTAATGCTTCAGAGCTTCTTGGTGCCAAAATTCAGGGGTACAGCACTTCTAAAGACAAAACCCAAAATTACGTCAATGCTAGCTAAGGGTCAGAGTAAGCTTGTAATATTATTTAGTTATTTAGACATAACGTGACAATTATTTTGGTTAATACATCTGGGTCATGTTTGGAGTCACAGAAATGTGTTGCCAAGACACACATGGCTATTGGGAGGGAAGAGTGTTGAGAATTATCTAAGTAGATACAAAATGAAGTCAGAACAAGATGGTGTTACCTTGGTCACTTCAAGTGCATGCAGAAAAGAAGAGAGACAGGGCAGGAGGGAGAAGTTCAGGGATGCCAGCCAGAAAGAAGGAAGGTGCCACGAGTGTTCCTTTTATCTATAGGTAAAGATGATTTTTTATCATTTTTGCTCCTTGCCATTGCACACATAATGCAACCTTTTGGGTGGAATTCAGGATTCAGAAAGATGATTCTTCAGGGAGATTACAGCAAAGTCTGTAGAACACTGGGGCCAGAACTATAGAGAAGGCACAGCTGGTGGTAGGATAATCTCCTGGCTCTTGGAGGGGAGTGGTTTGGGTGAGACAAAGATTCCTGGATTTAGAGCAGCAGCTCTGGGACTGGAGAGGGTATTAGAAATGTACATGAAACAGGAGGATGGAAGTAGGTTCCGGGGGTCTGGACAATATCCTTCCTTCTCTGCCCAGAAACCTGGAGTCTGTAGGGAGTTCTGGGCTCATGTGTGGTCTTTGTCTTCTGTTATTGTTTCAG
Seq C2 exon
ATCCAGAAGACAGGAGGCCTGGACAAGGTGGTAACTTGGACCGAACAGTTCCCCTATGCCCACCCACTCTGGCTTGGACAATTTATTGTTTTCCTGAACATCTATGAGCCTGACTATGCTAAAGCTGTATACAGCCGAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028713:ENSMUST00000102707:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(16.9=23.3)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types