BtaINT0046271 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013481 | CYP4A22
Description
Bos taurus cytochrome P450, family 4, subfamily A, polypeptide 22 (CYP4A22), mRNA. [Source:RefSeq mRNA;Acc:NM_001098990]
Coordinates
chr3:99918428-99922262:+
Coord C1 exon
chr3:99918428-99918661
Coord A exon
chr3:99918662-99922120
Coord C2 exon
chr3:99922121-99922262
Length
3459 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TGTCTTTCCCTTGATGACAGTTC
3' ss Score
6.7
Exon sequences
Seq C1 exon
ACAGTCAGGGACAGTCAGTGATCCAGAAGCCACTGCACCATGAGTGTCTCTGTGCTGAGTCCCACCAGAGCCCTGGGTGGGGTCTCTGGGCTCCTGCAGGTGGTCTCCCTGCTCGGCCTGGTTCTGCTTCTGCTCAAGGCGGCACAGCTCTACCTGCGCAGACAGTGGCTGCTCAAAGCCCTTCATCAATTCCCGTCTCCTCCTTCCCACTGGTTCTATGGACACAAGAAAGAG
Seq A exon
GTAGGATGGAGCAGGATGGGGGAGTGGGAGGGCAGGGAAGGCTGGGGTAAGGGATGGTCACGGTCAGTTAGTCCATGGGACAAAGCCTTTTTGTGTGACCAGCACATGGCCCCACGAAGTAACACAGCTTATCTCTTAGATCTAGGCTCCTCATCCAGTCCTGGGGGCTCACTCCTCCCAGGCCCTGTGCTGGTGTCCTCGAGTCTGTCAGACACCCCTTCCTCAGAGAGATCTCAGGCTGTCCTGGAAACCCTGCCCTTTGAAGACAATGGCTGTTCCTTATTGACTCTCCCTGCTCTCCAGGCAGAGCAGCTTTAACTGTCCTTACAAAACAGGCTTCTAGATGTTTCCCTGCTCATTACTCAATTGTATGCTCCCTGCCTGGCCCCGAGCTTGCTTGGGAGCACAGACATCAGTCTGATGGATCAGCCCTGTGGGTTCACTGTGTGTGGAGACAACACACAGGAATCTAAGACGGTGCGGGTCACAGGAAAAGAGGCTCACTTCCTGGGTCGTGTTATGTCAGGTATTAGAAAAAACTGGCTTCGTTTCTTAGGACTGAGGGATTTTTCCTGGTATGTAATTACAGTGCTTAATTCCTGACAAGTTGCTGTCACGCAGGAACGGTTTCCCAGGATGGGGTTAGGTGAGGAGAACTGCCTGTTTGGTGTCCTCTGTCTGAACTATGAGCTCTTGGAACTGAGCCTGTAATCCCCCTCACCCTCAGCACCCAGCCCAGAGCCTGCACAGAGAGGTGTCAGTCCATTGTGTGGAGGGACAGGCAGGAGAGAAAAGAGCAGCTTGCAGGCTTGGAGGGGCAGCACTTGCCTAGGGGTACGGGGAGCTCAGAGCAAAGTCAGGGGCCACGTGGAAATGGCTCACCAAGGGTTTGTGGCTTAAACAATTGTTAGGAGACAATCACAGGTTGAACAGATCTGAGGCCTCTCTTTCTCTGCAGCACGATTAGAGCAGAGTGGAGACAAAGAGAAGAACTAGAAGTAGCCCAAGCCCCATGCAGGCTGGCCCAGTACCTCTCTCCCCTCTCCTTCCTAATCTCCTGCACCTTGGGTGTCTCAAGGTCCTCTCCACCTGCCTGTGCATTCCAGCCTCTGGGACTTGGCTCCCCATGTGCTCTCTCCCTGGAATGATCTCATCCCTCACATGACTTTCTCACAAGCCCCAGGCCCAATTCATTTTCATTCTGGGTCTCCCAGGAGTGGAGAGGACAACTCTTTTTCTCTTGGATGTCCTTCTCACAACTCAGTGGTAACTGGATTCAGCTATTTCTCTCTTCAAGATCATAGCTATGAGCTTCTTCTGGAAAGCCTGCCTCTGGTTCATGTTTCTATCTTGAAATCATCTTGGTAAATTATGAATCAAATAATAGCAAGTGCAGGAAGAAGACTTTTCTAACATCCAGCTCTGAGTTAGACCCTATTCCCCAAAGCGTCCCCATAGGCTTTGTCTTTTCTCCATCACACTTTCATGACCCACTCCTGTTTTGGCCACTTAATATCTGAGTTTCCTCCACTAGCCTGCAGGGTCCAAACAGATGAGCATCTAGAGCCGCATCCTAATTTAGTACCTTAAATCCATGCCTGGCACAAAGTAAATGCTCAGTAAACACAGGCTTAGTGAAGGAACGTGACCCACAGTACAAGTTGCCTCAAAGCTGGGGAACTCTGATGGCAGAAAAATGTAGGCCGAGATCAGATACCAAAGGGGCAGAGGGTTGCTCTGAGTTACACAGAGTCATTGAAGTGAAGACAGTTTGACTACATGAAACACACCTGGGACCAATTGTTGATGAGAAATCCGGAGGTGACAAAACAAACTGAGTCTCCAAAGTTGAGGAAAGGCAGTTGCTCTGTGGCACAGAAAAAAGGCCACCAGGTAGAGGGAAGAAGGTGGGCAAAGACCTGGAAGATGAACAGGTGGAGCCAGTGCAAGAAGCACTGGAAGCAGCATCTTGAAGGCAGAGGCAATGCATCCTGTGGAATCGCCACCTCATCAGGGCAAGAGTAGAGACGGTAGAGACAGAAAGGAAACGCCTTGGTGGTCCATAATCAGGAGTTTACAAAGATTCCTCTAAGTAGTGGTAAGTGTACAAAAGTTTCTGACAGTTAGTCAATGAAAATGAGATGAAAAATCCACATATCAAAATCTTATTTCAATACCATTCTCATATGTGTACACTCAGAATCTGTCCTACAACTGTGCACACACTCGGTATGAAAAATAATAATATATACACACAATGTGGTATTTAATTTTTTCCACTTAGCCATATACATTCCAAACAATCTTTCTTACTAAGAAACATTAACATGTATGCTGGGATAATATTAAACGTGTGTAGTGATTGGTACGGCAAAATTAAATTAACATATAAATTTAATTCTTAAGATATAATCTGTTCATTCTTTAAATAAATCTAATCATATGGCATCTGGTCCCATCACTTCATGGCAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTATATTTCTGTGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGATGCTTACTCCTTAGAAGTAAAGTTATGACCAACATAGACAGCATATTAGAAAGCAGAGACATTACTTTGCCAACAAAGGTCCTTCTATTAAAGGCTATGGTTTTTCCAGTGGTTATGTATGGATGTGAGAGTTGGACTGTGAAGAAAGCTGAGCGCCGAAGAACTGATGCTTTTGAAGTGTGGTGCTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATCCTAAAGGAGATCAGTCCTGGGTGTTCATTGGAAGGACTGATGCTGAAGCTGAAACTCCAATACGTTGGCCACCTGATGCAAAGAGTTGACTCACTTGAAAAGACCCTGATGCTAGGAAAGATTGAGGGCAGGAGGAGAAGGGGACGACAGAGAATAAGATGGTTGGATGGCATCATCAACTCAATGGACATGGGTTTGGGTAGACTCCGGGAGTTGGGGATGGACAGGGAGGCCTGGCATGCTGCGGTTCATGGGGTCACAGAGTCAGGCATGACTGAGCGACTGAACTAGACTGAACTGAATCATATGACAATACTGCTTACCAAGTGATAGAAATTATTATCAGTTGCTCAAGCAACAAATGATTTCCAAAATTGTCATAAACCAAGTAATTATCTTTGATGTAAGTTTCTGTAGGCAGTTTGTAGTGTTGGCCCATACCTCTACCTGACATGGGACAGAATCCGATCTTAGGACAGTGATGGACAGCCTGCAAGGTTGGATTAGATTCCAGGTCAGAAGAAATAGTTCTAAACTCTTAGTTCTGCTGATGGATCCAGAATGATAATCCGGTACCCTTCCAGACCTTCACCCTGACATCAGCTCCAGAACTAAAAGAAAGGCATTATTGACTTGTCTTTCCCTTGATGACAG
Seq C2 exon
TTCCAAAAGGAGAGTGAGCTGCCACCACTACTGGAAAGGGTAGAGAAATACCCAAAGGCCTGTGTTCGCTGGCTGTGGGGCACAAAGGCCTTAGTATTGGTCTACGACCCTGACTACATGAAGGTGTTCCTGGGGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013481:ENSBTAT00000017936:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.1=21.5)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]