GgaINT0040103 @ galGal4
Intron Retention
Gene
ENSGALG00000023421 | CUZD1
Description
CUB and zona pellucida-like domains 1 [Source:HGNC Symbol;Acc:HGNC:17937]
Coordinates
chr6:30922997-30923847:+
Coord C1 exon
chr6:30922997-30923147
Coord A exon
chr6:30923148-30923626
Coord C2 exon
chr6:30923627-30923847
Length
479 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
TGATGTTTTTCTCTCTGTAGCCT
3' ss Score
9.57
Exon sequences
Seq C1 exon
CAATTGAAAATTGTGGGGGAAGCTTAACTGGTCCCAGTGGGACATTTACCAGCCCCAACTACCCAGCAGCTTACCCTGAATTTACCTATTGTGTCTGGCACATACAGACTACAAAAAACTCGAAGATAAGCTTAGAGTTCCAGGATTTTTT
Seq A exon
GTGAGTAGATATTTACTACACACTTGTTTACTACACACCATTACTCCTTCATTGTGTTTAGAAGCGTTACTTCAAATACAGCAAGGAGAAGTGCTTGCAAGCTTATAAATATCTATACACCTTGAAAACAAATATGATTTGCTGACTTTTATGATCAGGTAATCACAGCACGTTCCAAATGCCTATGTGCTACCCTATAGCTGTTGCAGAGCCAGGCAGCAAGATGGAATTGCAGGTGAGTCACCAATAGCTACTGTGATTGATCTGAATTTAAATCCAGCACTTTCTTTTGCTACATAAAGGTCACGTTTCAAAATGTCACTTATGGGTCATCCTGACCCTTACTGCTTTTTATCAAGGTTGATCCCCTGTAGTTAGTGGGATGGCAGCACCAATTGACATTGTGCATGGAGAAAAGCCTCAAGACCAAGGGAATTCTCAGACTTCCCAGTATAATACTGATGTTTTTCTCTCTGTAG
Seq C2 exon
CCTGGAACTAGATCAGAACTGCCAGTTTGATTTTCTGGCAGTCTACGATGGCCTCACCACTGACACTGGCCTAATTGGAAAAGCATGTGGTGTTTCTCGACCCACATTTGAATCTTCTTCAAACGCCATGACAGTTGTGCTGTCTACAGACTACGCCAACTCCTACAGAGGGTTTTCTGCTCGGTATACCAGCGTTCTGCCAAGTCCCCCAGAGCCTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023421:ENSGALT00000038694:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(42.2=90.2)
A:
NA
C2:
PF0043115=CUB=PD(56.9=82.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGGGAAGCTTAACTGGT
R:
GACTTGGCAGAACGCTGGTAT
Band lengths:
346-825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]