MmuINT0044253 @ mm10
Intron Retention
Gene
ENSMUSG00000040205 | Cuzd1
Description
CUB and zona pellucida-like domains 1 [Source:MGI Symbol;Acc:MGI:1202881]
Coordinates
chr7:131316053-131316758:-
Coord C1 exon
chr7:131316608-131316758
Coord A exon
chr7:131316271-131316607
Coord C2 exon
chr7:131316053-131316270
Length
337 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
CCAGAGGCTGTCTTTCTTAGACT
3' ss Score
3.37
Exon sequences
Seq C1 exon
TTATTCCAAACTGCGGTGGTGACCTGCGAGCATTGGAAGGGTCCTTCAGCAGCCCCAATTATCCAAAGCCGCACCCTGAGCTGGCATATTGTGTCTGGCACATACAAGTGGGGAAAGGCTATAAGATACAATTGAAGTTTACAGATCTCTT
Seq A exon
GTAAGTATTGTGGTCTACTGCAGTGACACACAAGCCACTGGGGGACCAACCTGGGGAGAAAAAAAAATCACATGCTCCCACATGTAGGTACTTTTCAGAGAAGCACTGTAGAAAGAAACACACATACCAGTGCTGTTGACTATTGTTCTGAGGGACTGACAAAGTTCCAGGTCTGCCATCATAAATCTGAGATGTCATTGTAAGGGGAAAAATCCTTCATGACTTTAGAAGGAATGATAAAAAAACAAAAACAAACAAACAAACAAACAAACAAACAAACAAAAAACAGGACTGAATCTGTTTGAAAAGCTCTTACACCAGAGGCTGTCTTTCTTAG
Seq C2 exon
ACTAGAGATGGATGAAAACTGCAAGTTTGATTTCATCGCAGTCTACGATGGCCCCTCCACCACGGCAGGCCTGCTCAAACAACTCTGCGGCCGTGGGAAGCCTACCTTAGAATCTTCCTCTGACGCCATGACTGTCGTGCTATCTACAGATTATGCCAATTCCTACAAAGGCTTTTCTGCTTCCTACACTTCAATTTACATCCACGATGTCAACACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040205:ENSMUST00000046611:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(42.2=90.2)
A:
NA
C2:
PF0043115=CUB=PD(56.9=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCAAACTGCGGTGGTGAC
R:
TGAAGTGTAGGAAGCAGAAAAGCC
Band lengths:
342-679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types