HsaINT0043555 @ hg19
Intron Retention
Gene
ENSG00000138161 | CUZD1
Description
CUB and zona pellucida-like domains 1 [Source:HGNC Symbol;Acc:17937]
Coordinates
chr10:124596347-124597070:-
Coord C1 exon
chr10:124596920-124597070
Coord A exon
chr10:124596565-124596919
Coord C2 exon
chr10:124596347-124596564
Length
355 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
CAGAGGCCCTCATTCTCTAGCCT
3' ss Score
3.85
Exon sequences
Seq C1 exon
CTATTCCAAACTGTGGCGGTTACCTGGATACCTTGGAAGGATCCTTCACCAGCCCCAATTACCCAAAGCCGCATCCTGAGCTGGCTTATTGTGTGTGGCACATACAAGTGGAGAAAGATTACAAGATAAAACTAAACTTCAAAGAGATTTT
Seq A exon
GTAAGTACTGCTGCCCAATTCTGTTGGAACAAATGCAGTAAACCCACCTGGCAACTGGGGGATTTGGGGAAGAGAAATTATCATACGTAATTCTCATATATGGGCACTTTTCAAAGAATTGATGTAGAAAGGAAAACAGTGATACTATTCCATTGAACTAAGTTGACTATTTTTCTGAAGATTCTGAGGTCCTTGTCAGAGACTATCAAAACCCCAGGTTTGTCTTCGTAAACCTGAGATACCATTGAAGGAAAAAAAAAATCCATAATCACTTAAGAGTAGGATTGTTGGGATGTTAGAAAATAGAATTGAATTGGTTTGAAACTCTTTTTCACCAGAGGCCCTCATTCTCTAG
Seq C2 exon
CCTAGAAATAGACAAACAGTGCAAATTTGATTTTCTTGCCATCTATGATGGCCCCTCCACCAACTCTGGCCTGATTGGACAAGTCTGTGGCCGTGTGACTCCCACCTTCGAATCGTCATCAAACTCTCTGACTGTCGTGTTGTCTACAGATTATGCCAATTCTTACCGGGGATTTTCTGCTTCCTACACCTCAATTTATGCAGAAAACATCAACACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138161-CUZD1:NM_022034:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(42.2=90.2)
A:
NA
C2:
PF0043115=CUB=PD(56.9=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGGCGGTTACCTGGATA
R:
TGCATAAATTGAGGTGTAGGAAGCA
Band lengths:
344-699
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)