GgaINT0041361 @ galGal4
Intron Retention
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8444972-8446825:+
Coord C1 exon
chr6:8444972-8445095
Coord A exon
chr6:8445096-8446813
Coord C2 exon
chr6:8446814-8446825
Length
1718 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
TCCACTGTAAATTGCTTTAGTCC
3' ss Score
4.19
Exon sequences
Seq C1 exon
GTGAGGATGCAATGACAGGTGACACGGACAAGTATCTCGGACCCCAGGATCTAAAAGAGTTGGGCGATGATTCTTTGCCTGCTGAAGGCTACATGGGCTTTAGCCTGGGAGCCCGCTCTGCCAG
Seq A exon
GTATTGTATATGCTGTTTCTTGTGTTTGTGTGTCACCACAGTGACAAGTTCTTACCAACCAAGCACTCTCTATCACATAAAGCTGGAGTCTATTTTGAAACGAAGCAGACGGGGTGTATTTCCGTGTTATGATAATACTGAGCCTTTGAAGCATATGTTCATTGCTGTTTTATTTCACAATCCTTATTCATGTTGGCTTCTTATGGCAATGATACAGAAAACTAACTTCATTTTTTCTGGTATCTACTCGTTCTCTGAGTATCTCCAAGGCCTCTCCTCACTGCGAGTTTCCTACTGGTCTGGAAACTGATCTAGCACTACCACCAATACTTGAGTTCTCCTCACTGCTGACCCTCAGACTGATGCTCATGTCTGAGTATACCCTGATGGACTCATTTAGCCAAAGAATGTAAATGCCAGAAAAATTGAATTAAATCATTTTGCTGTTTTGGTGCTTTTATTTCTTTAAAGGTGCCAGTGAATAAGCAGACAGGTAGTCAATATTAAAGAAAGTTGGTCCCAATATTTAAAGAAAGATAAGGTGAGGTGAACCCTAAATTTGATGTCAGGTTTCTTTTGACTAAGAAACAATGTTGCGTAAAACAGGCCAAAGTTTCCGTGAACAGGATAAAACATTGTAGAGTTAACATAACATCTGACTACTGTTGATTCAAACTCACGTGTTTGTAGATCAACATTTTAGGTTTCTTCTTTGAATCTTGCTAGAGACTGCACTATGCATTGCTCAAAACAAGTAAAGCTGTATGAGGAGAGATTACTTCCATAGCTGTGGATTTGCAGTGTGTTTACTGACAGTTGGATTGTAGCAAAGCTAATAATTAAACCTCATATGCTGAAGCCCTGAGGACTTTTTCCTGTACTGTAGTTTAAAGATCTGCTTTAAAAAGTGAGTTCATTGTCTAACAGTGAATGGCAACTCCCATAAGGTAAAGCCTGGATGTCTGCTCCTCAAGTCTTGTTTGTTATGGTTGCATTAGAAATGCAAGTATGCCTTGCAAATTTGCTCTTTAGTAATACCCAGCCATGTTTTGCTTCACTTCCAATTTTTAGGTAAGTTAATAAGAATTTTTGTGATAATACATTCACAGAGAATGCCAAAATGCTTTTAAATAGTTCATCAGCTAGAACTGAAGGGAGAATCGGATGTCTTTGTACAGTTAATTAGCAAAGCTGATGTGCTGCTTTTGAACATGAGCTGGCATGAACAAGGTCATGGGACAGCACTATCAGATGTGGCCAGTTTGGAGGGGATGGAGGAGAGTGTGAGGCCTGTGTACGGGGCTGGGCGCTCTGCTTTACAGGACACCTCCTCATTATGCTGCAGAGGTCTAAATTCTCACTCTGCTTATGGGAAAGCAGAATTTCACTGTCAAAATCTGTTAGATAAACCTGAGAGTTTTCTTCGAGAGAGAGAGTTAATATTTCCATGCTTCTGATTTTAGCAGTGCCATTATTATTTGTTGCTGCGTAACTCATGTTTTACATTGCACACATGTTATGCTCAGAGGAGACGAATACAGTGGTTTTTCGTTCGGTAAAAAGTATTCTGAGAGTATATTTTACTACTGATTCTGAGTGTAACATTAAGAAATAAACACATTAAATATATAAGCCATCCAGCCATAACATCTTGCTTTTCCCGTCTGATTCTTTGCTTTCTATTTCTCCTGTTTCTTTTCCACTGTAAATTGCTTTAG
Seq C2 exon
TCCAAAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135:ENSGALT00000041033:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]