GgaINT0042863 @ galGal3
Intron Retention
Description
NA
Coordinates
chr6:18632558-18633743:+
Coord C1 exon
chr6:18632558-18632715
Coord A exon
chr6:18632716-18633591
Coord C2 exon
chr6:18633592-18633743
Length
876 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
AATTTTTGTTCCTATTTCAGGCT
3' ss Score
8.95
Exon sequences
Seq C1 exon
GTAGGAACTGAATTGATCCGTGGAGTGTCTGGAGGGGAACGGAAAAGAACCAACATCGGGATGGAGCTCATCACAGAGCCACCAGTGCTTTTTCTGGATGAGCCAACAACAGGCCTTGATGCCAGCACGGCCAATGCTGTCCTCATCCTCTTGAAGAA
Seq A exon
GTAAGAGTTGGTTCTTCAGGGCTCTGCTGGAATTTCTGTGTTTATTATACGAAAAACAAATGCTGCTATGACCGAGTAGTTACAAATTTTTTTAAACAGTTAGACTACTAGACTTGTAAGTGGTAGTAGACTCTTTATGTGGGTCTTGTCCAAAGCTTATTGAAGTTGACGGGAATCTTTTGACAGCAAGGATTGGATTGAAGCCCAAAAAGCAGATGTGGCTTGGACAACTTCCTTTTGCCACAGGGAGGGATGGATTGTGAGGTCAAACCTTGAAATCATAATCTCACATAATGAGAATGAATTCCTAACACTTCTGAGTTTGTGGCATGTGTAATTTTCCTGAGGGAATGTTTTACTTTGCTGCTTGTGGATAGAGGGTCTTAATCAGCAGGGATACTTTTTGAACATCAGCGCTAAAGCACTTGGAAGTGCATCTGACAGACCTGAGAGAAAACTGGTTTTGACTTTTGTAGAGAGTAAGTCGTCAGCAGAAGGGTGAAGTTGTAACTGGCCAGACTTCCCTAGCCTGCTGTGTAAAGCCTGGCAATGCCACTGAATGCAGTAGGATCTCTTCTGTTAGTCAAGTTGAAGCTTGCTACAGAAAAAACATTAAGGACAGTTTAAATATAGCAGTGGGCTTAACCTTTGCTAGCCACAGAGAACATACTCTGTCTGCCTGAACTGTAGCAACAGTCTCTTGAAATGATGCTTGAAGGTCTTGCAGGCAGTATCTGACACAGTGAGGAAGAAGAGGGAACTAGAGCTTTATTGGGCCTTACTTGGATTTGGATGCTTACTTTTTGCTTCAGCTAATGTGACGTCTCTGAAATGCGAAGTGTGATGTATTTCAGAGAATTTTTGTTCCTATTTCAG
Seq C2 exon
GCTCTCTAGAAGAGGCCGAACCATCATATTTTCCATCCATCAGCCCCGCTATTCCATATTCAAGCTGTTTGACAGTCTGACATTACTAGCTTTGGGTAAAGTGCTGTACCATGGTCCTGCAAAACAGGCCCTGGAGTATTTTAGTTCTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005792:ENSGALT00000040097:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(23.8=67.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGGAACTGAATTGATCCGTGGA
R:
CAATAGAACTAAAATACTCCAGGGCC
Band lengths:
310-1186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]