HsaINT0001578 @ hg19
Intron Retention
Gene
ENSG00000118777 | ABCG2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 [Source:HGNC Symbol;Acc:74]
Coordinates
chr4:89039261-89042944:-
Coord C1 exon
chr4:89042787-89042944
Coord A exon
chr4:89039413-89042786
Coord C2 exon
chr4:89039261-89039412
Length
3374 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTGTCTCACTTTTAACTTAGGAT
3' ss Score
8.15
Exon sequences
Seq C1 exon
GTTGGAACTCAGTTTATCCGTGGTGTGTCTGGAGGAGAAAGAAAAAGGACTAGTATAGGAATGGAGCTTATCACTGATCCTTCCATCTTGTTCTTGGATGAGCCTACAACTGGCTTAGACTCAAGCACAGCAAATGCTGTCCTTTTGCTCCTGAAAAG
Seq A exon
GTAAATGCTCTGGAAACATTATTCTTTAGTTAATATCTTATCACTACTATGTCCCAGATATTCTTGGGGCAGGGGGTTCAGAAATGATCAAAGTAATTTCTTCCTCTTCTGTTGGAGTGAAAGTCAGTTAACAAATGAAAAGCATTATCAAGAAAAACAAAGCAGGTAAGAATGTAGGGAAGGATGTCTGTGATGAGGGTGTAGGGGGGTTGGGCCTGTTTTGCTGCTGTCTCTTTAGCTTCTTTACTCAACACCAACAGACACACACATACACATTTTTTCTCCCTCTCTCTGCTCTATAACACTGAACATTTTGTAGTTTTCTGAGTAGACCTTTTTATTTCACACCTTTTTCATCTTATTCTTCCACCTTCAGTACTTTTTCTTTTTCTTCTTAGCTTCCTCCTGTTGGGCCTTTTTTACTCTACTTATATCATCTTCAGACTGGGTTGTGAGTCTCCCATTTTGCTTATGAGGAATCCTTAGCATCTTCTATTTCATATTGTACTGAAATTGTTGACCTACTGGCCTGATCCTCTTTGAGGCAGAATGTTTTTGTGTACACTGCTAGCATACAGTAAGTTCTTAGAAAATGTTAAAATTGAAGTGACTCTTCACATAAAATATTTTGAATAGTAACAGTTTTGAACAGTGATTTTGGCCCTTCTTCCACCTGTGTATTGTTATTATAATTATTACAAATGTTATTACAATTCAAGGTGAGATTTGGGTGGGGACACATATCATTCTGCCCCTGGCCCCTCCCTCCCAAATCTCATGTCCTCACATTTTAAAACCAATCATGCCTTCCCAACAGTCTCCCAGAGTCTTAACTCATTTCATCATTAACTCAAAAGTTCACATTCTAAAGTCTCATCTGAGACAGGGCAAGTTCCATCCACCTATGGGCCTGTAAAATCAAAAGCAAGTTAGTAACTTCCTAGATACAATAGGAGTACAGGCATTGGGTAAATACACCTGTTCCAAATGGGAGAAATTGGCCAAAACGAAGGGGCTACAGGTCCCACGCAAGTCCGAAATCCAAAGGGGCAGTCAAATCTTAAAGCTCTGAAATTATCTTCTTTGATTCCATATCTCACGTCCAAGTCACACTGATGCAAGAGGTGGGCTCCCAGGGCCTTGGGAGGCTCTGGCCTTGTGGATTTGCAGGGCACAGCCCCTTTTGTGGCTGATTTCACAGGCTGGTATTGAGTGTCTGTGGCTTTTCCAGATGCACAATTCAAGCTGTTGGTGGATCTACCATTCTGGGGTCTTAAGGATGATGGCCCTCTTCTCACTACTGCACTAAGCAGTGCCTCAGTGGGGGCCCTGTGTAGGGGCTCCCACCCAACATTTCCCATCTGCAGTGCCCTAGCAGAGGTTCTCCATGAGGGCTCCACCCCTAAAGTTGACTTTTGCCTGGACATCCAGGTATTTCCATACATCCTCTGAAATCTAGGTGAAGGGCAGGCCTAACACCACATGGAAGCTGCCAACTCTCTGTTGGTCCCCTTTAACCATGGCTGAAACATAGGGTACCAAGTCTCGAGACTGTACAAAGCAGCAAGGCCCTGGGCCTGGCCTAGGAAACCATTTTTTCCTCCTAGGCCTCTGGGCCTGTGATGGGAGGAGCTGCTGTAAAGACGTCTGACATTCCCTGGAGACATTTTCCCCATTGTCTTGGTGATTAACATTTGGTTCCCTATTACTTATGCAAATTTCTGTAGCAGGCTTGAATTTCTCTTCAGAAAATGGGTTTTTCTTTTTTATCGCATCATCAGGCTGCAAATTTTCTGAGCTTGTATGCTCCGCTTCCCTTTTAAACATAAGTTCCAATTTCAAACCATATCTTTGTGAATGAATAAAACTGAATGCTTTTAACAGCACCCGAGTCACCTCTTGAATGCTTTGTTGCTTAGAAATTTCTTCTACCAGATGCTCTAAATCATCTCTCTCAAGTTCATAGTTCCACAGATCTCTAGGGCAGGGGCAAAATGCCACCAGTCTCTTTGCTAAAACATAGCAAGAGTCACTTTTATTCCAGTTCCCAACAAGTTCCTCATCTCCATCTGAGACCACCTCAACCTGGACTTCATTGTCCATATCACTGTCAGCATTTCAGCCAAAGCCAATCAACAAGTCTCTAGGAGGTTCCAAACTTTCCCACATCTTCCTGTCTTCTTCTTAGCCCTCCAAACTGTTCCAGCCTCTGCCTGTTACCCAGTTCCAAAGTGGCTTCCAGATTTTTGGGTATCTTACAGCAGCATCCTGCTCTACCAGTACCAATTTACTGTATTAGTTTGTTCTCACACTGCTAATAAAGACATACCTGAGGCTGGGTAATTTATAAGGGAAAGAAGTTTCATGGACTTACAGTTGCACATGGCTGGGGAGATCTCACAATTTTCGTGGAAGGCAAAGAAGAAAAGGCATGTTGTACATGGCAGCAGGCAAGAGAGCTTGTGCAGGGGAACTCCCATTTATAAAACCATCAGATCTCGTGAGAGTTTTTCAGTACCACGAGAACAGTATGGGGGAACTTCCCCCATGATTCAATTATCTCCACCTGGCCCCATCCTTGATATGTGGGGATTGTTACAATTGAAGGTGAGATTTGGGTGGGCACACAGCCAAACCTTATCAACCTGTAAGTCATAACTCCTGTGAAAAGGTACTTTAGCACTATTTTGGTCATGGACTTAGACCAGAGATTAAATCCCAGCCTTGCCTCTTACTAACTGTGATCCCTTGGCCAGTTGCTTGATCCTTTAAGACATATTTATAAAATGAGGGTAATAATAATAATATTGGAACTGCCTCATGACAATATTGTGAAAATTGAAATGAAGTTATCTCTAAATTATTTAGCAAAGACATAGTAAGTACTCAGTTATGTTAATTGCATTATTAGGGCAGAAGAGTGAAAACCAATTTTTAAAGAGCCAGAAGACCTAAATGATAAGTCAGAATGAGATATATGACCATTGTTTTAATATGCAGTCCATAGTTAGTTCTCAAACTTGTAAATACTTGCAGATTACCTGGGTTGCTTCTTAAAATATGGATTCCCTAGACCTACTGCCAGAGATTCTAATTCAATGTCTGGGAAGACTGTCCTAGAATCTGCATTTTTAATAACTATTCTAGTTGATTCTAGATTGTCAATACAACACACTGAAAATTCCTATTCTGTTTTAATAAAAGCATTGAATTTAGGTTTGCTAACTATAGCTAAATAATATGAGATGAAAAGTTAGTAAGACAAAGTCAGGCTGAACTAGAGCAAACAATCTAAAGGCAAGAATAGAGTATTTTACTGAGAAATACAAGTTTCAGATATTTAATGACTTAGTATTGTCTCACTTTTAACTTAG
Seq C2 exon
GATGTCTAAGCAGGGACGAACAATCATCTTCTCCATTCATCAGCCTCGATATTCCATCTTCAAGTTGTTTGATAGCCTCACCTTATTGGCCTCAGGAAGACTTATGTTCCACGGGCCTGCTCAGGAGGCCTTGGGATACTTTGAATCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118777-ABCG2:NM_004827:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(23.8=67.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)