RnoINT0011111 @ rn6
Intron Retention
Gene
ENSRNOG00000007041 | Abcg2
Description
ATP binding cassette subfamily G member 2 [Source:RGD Symbol;Acc:631345]
Coordinates
chr4:88864454-88866921:+
Coord C1 exon
chr4:88864454-88864611
Coord A exon
chr4:88864612-88866769
Coord C2 exon
chr4:88866770-88866921
Length
2158 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTTTCCTTCTTGTCATGTAGGAT
3' ss Score
10.53
Exon sequences
Seq C1 exon
GTTGGAACTCAGTTTACCCGTGGTATCTCTGGAGGAGAAAGAAAAAGGACAAGCATAGGAATGGAGCTCATCACTGACCCTTCCATCCTCTTCCTGGATGAGCCCACAACTGGTTTGGACTCAAGCACAGCAAATGCTGTCCTTTTGCTCCTGAAAAG
Seq A exon
GTAAATGCTACAAGATATTTTCATTTATTCACCATCAAGTCACTTATTTGTGGCACTATATATTCTTTGCACAGGAGTAAACAACAGATGTCTTCCTCTATTTAAGGGACAGAAGAGATATTAAGAATGGTTAATAAGAGTATAGAGAGTGATGGCTGTGGTGGGGCTGGGTTGTTGTTTTAAATAGCAAGAGGGTCTTGGAGGATCTTGGGCATGGACAAGGGATCTGGGAACGAGAGAATGAGACCTGACTATAGCTGGTGACAGAATCTGGCTGGAGGGGACAGCCATAGGACCCAAGACAGCATGCCTGATATGTCTAGAACATCAAATAGACACACAAACCCAGTTATTTTAGGGTTGTACATAGGTAGCATACAGTTACAGCAAAGCACCACAGACTAGGTAGCTTAACAACAGAAATCTGCACTCCTGTGCAAACTTACCACCTGCAGTCTGATGTGCAGACGTTGCTTCTGAAGGTTGGAAGCGAAGCCTGGGAGTCTTCCCTGGGGACCCTGAGAGCATGTGGTCATTCTGATGTCCCTAAACCTCAGACCGGTTCTAAGAATCAGGCCTCACACAGCTCTGCTTTCTCCAGGTTCCTCCCTATGGCCTTCCAGATCTTATAGTTCCTGACTGAGTGTTCATCCTGGGTCTGTTTACTATAGTCTCTCTCCTTCCCTTTGGGGTTTAAATTTCATTGCACATAATCATTGTACCATGCTACTGTGTTACATAAGGACATTTTTACAGAAATATGATGTGTGGTGAGCACACCCCTCTATTCTTCCTCTCTCCCCATTTCACACTTCCACTCCTGTGCTTTTTCGCCCCCTAGACAGTCTCACTAATTTTATGTCATACATACATGCATGGTTATATGTATCTATAAAATATAGGAACCCAGATGAGAGAAAACAGAGGATATTTGTCTTTATTAATTGGTTTAATTGACTTAACATGATTTTTCTCCAGTTTAAATCAACTTTCTTGCAAATGTCAGATTTTATATCACCATTTGTTTATACATTTCTCAGGTATTGACACCTAGGTTGGGTCTGTAAATTTTGCTGCATTCTCTATACTTAGTTTCATCTAATATCTCTATACACACATTTTCTCTCTCTCTCTGTCTCTATCTCTCTGTGTCTCTCTGTCTCTGTCTCTCTCTCTTTTTCACACACACACACACACACACACACACACACACACACACACACGGTGGGGTGGGGGACTGATGCTTGCTTGCTCTGAAACTGACCTATAGTTTCCTGAGTAGAACTTATGTTACAGTTTGTTTGGTGCGTTCTTCTACACTGAGTGTCTTTTCTTCCTCCAGCCACCCCTTTGAGGTGGCCCCTGATATTCTACTTGATAAACTTCAGACTGAGCTTTACACTTTGTATTTGGTATACAGTAACTCCTAGATGCATCTATTCTATAGTCTATCTTAATTATTCAATTATTGATATTCTGGCTTGGTGGGGTATTATTGGTAGTGGTGGTGGGGTATTTGTTTGTCTGTTTGTTTGCTTTTGTTTTTCAAGACAAAGTTTGTGTAGTCCTAGAACTCACTCTTGGCTTCTGCATTTACAAGCAAAGGGTCTTCCTCTCTGTGCATCCTGTTGTATGTGTTTCCACACCCTAATAAAAGCCTTTCTTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCTGTGAAGATCGTCCCAGTGTCTGCATTTGACAGCCAACATTCTAATGTTTAATGGAATCCATTCTGCAGGTTCCTTTCTTAAGAAATCATAGCAGGACTTTTTGACTTGGATTTTGTTTGTTTCTAAGCATCATGTCCAAGGCCTCTCACATGCTAAACACTTTATTTACAACTGGTCTCCAAGAGTGCTCTACTTCCAGCTGCTCTTGCTTTCCATAAAAGCATCAAGTTTCATTTTCCTTGCATATAGTTTGATACTTAAAAATATGTAGAATGAAACTATGATCTCAAGCACATAGCTATATGTGTATAGGAGAAAAGCAAGTTGAAATTGGGACCCATGTTCCAACAGAGGGAATAAAGTACTCTTCAACAGTAAATGTAAGAGTCAGGATCTTAATGACCCATCCTTTTCCTTCTTGTCATGTAG
Seq C2 exon
GATGTCTAAACAGGGCCGGACCATCATCTTCTCCATTCACCAGCCTCGGTATTCCATCTTTAAGTTGTTTGACAGCCTCACCTTACTGGCTTCTGGGAAACTCATGTTTCATGGCCCAGCACAGAAGGCCTTGGAGTACTTTGCATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007041:ENSRNOT00000009546:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(23.8=67.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]