GgaINT0043439 @ galGal3
Intron Retention
Gene
ENSGALG00000007078 | F1P328_CHICK
Description
NA
Coordinates
chr6:23442505-23445435:+
Coord C1 exon
chr6:23442505-23442525
Coord A exon
chr6:23442526-23442742
Coord C2 exon
chr6:23442743-23445435
Length
217 bp
Sequences
Splice sites
5' ss Seq
CAAATAAAA
5' ss Score
-6.29
3' ss Seq
ATTCTGCTCCTCTCCATTTCAGA
3' ss Score
-10.15
Exon sequences
Seq C1 exon
GTGAAGCTACAGTATCATCAA
Seq A exon
ATAAAAGAAAAGTACCTGAGTGAATATTGCTTTTCTGGAGCCTACATCCTCTCCCTACTGGAAAATGGCTATGAATTCACTACAGAAAACTGGAAAAGGATCCACTTCCTTGGAAAGGTGTGTTGATTGCCACTTCTGCTACACAGCTTTGCCCATCTTCCACAGGGATGATACTGCCCTGGCACCTTCCGTCTCTGATTCTGCTCCTCTCCATTTC
Seq C2 exon
AGATCGGCAGCAGCGATGCAGGCTGGACCCTGGGCTACATGCTGAACCTGACCAACATGATTCCTGCGGAGGAGCCTCCTGCACCTCCTCTTTCCTATGGCAGCTATGTGGGGCTGATGGTTCTGTGCTCCCTTGTGCTGGTATCAGTGATCCTGCTTGCCTGGCTTCTCTTCCACAAGCCCAAGTGCCTGCAGAAAGGGGTTGTCTAGGAAGAGCTATGGAGGGAGAGGGGCCCCAGCTGCTCAGGGCTAGGAGCCCACTGAAGACCAGGCTGTAGCGCAGAGTCCCCCTCTCTGAAGCTACTGACTGTGTACAACAAGGGCATTTGTCTCTTTTAACTCTCACTTGCACTGACAGATGTTGGGACACCAGGCTCGCCACCTCTCTGCCAAGGACAGACAAGCGAGCATTCCCTTCTTGAATGGGTCGTATTTTCATTCACTGAAACTCTGCTGCTTGTTTTTTATTGCCTTGTGCACAGCATTATGAAGAGAAAAGCAGCACCAATCTTTGGGAGCCAATGCTCCTGCAAGAGTAATCTCAGGGTCCCACGTGCCACTGAGCTCTTGGGAGTGATCACACAGGGTGATCCGGTTCCTCCTCTGCTGAGGCTGTTCCCAAGAGCCATTCCAGCAGGGAAACTGCACCAGCACACCTCTGCTTGCCAGGCATGGTCACTTGTAGCCAGCTAGCCCCCAAAGGCTGGTCATGCTCCCAAATGTCACTCTGGGACAAGAAGGGATGGGAATGAAGAAACTGAGCGTGCTGGTGGTTATCAGTCCTTAGCTGGGCTCTGGCAGCGGTCTGCTCCTTTCACAGGTGGCAAGAAGCCTCTTTCCCACGTCTTCCTGATGTTGTTGCTGGACCAAAGCTGGCTCACTGTTACACTGAGCCATTCCCATGTCCCTAGGGTGACTGTGCATCAAGACATGAGATTATTGTAGGAAAAGTTCATCCTGGCCAAGGATTCTTGACAAGTAGTGAGCACATATATCTACAGGAACTGTGATCTGATCAGCGTGCCTCTAAGTATACACCCACTAAAACAATCCAGTGTCACTGTGCTGATCATACAGCAGTCTCTGACCTAGGGAATATGTTTATTGGGCCATTTCCCTTTGTAAAAAAGACAGCTGCTAACAGCCAGCATGAGCACACACACAGCCACTCTTTCCATCAGCAAAAGCATGGAAAATTTGCCTTTCTTTCCCTCATGGCTTAGGCTACTCCCCAAACAGTAACACCTAGGTGCTATAAGTGCACTCACTACAGCCCATCTTCTAGCGCACAACTAGATGGTGCCACTGATCAGGTTTATGAATCACTTTCTTCTGTTTCCCATTCCTTGGTCCAAAACAGAGAGGTAAGTCAGCAATCAATTTTTATGGCAATTGGAAACCACTGGTGCCTGTTTACCTCCCAAGGAATCTAAGCAATCTCTTCTCCTAATGATACATGTGTGCTGGAGGCCAAAAGAAAGCAGATACTGTGGAGAGAAAGGCATGGCACAGTCACCTTTGCCTGTTTCCTTGAGCAAAGCTGCAGGAAAAGCAGGAGATGCAACATGAACGAAGCTTCCTCCTTTGGGCAAACACAGATGTAGAGCTCAGGGCTTTTGTGCTCTCCCAGCTTGTCCTTCTGCACAGTGCAGGCTGGAAAATGTCCCCTACTTATTTCTAGTTCATGCCTGGAAGTAGGAGTCATGACATACTGAAGGTAAGGGGGAAAATATACCCTGTCCTATGGTAAGATGTTAGGGCATTTCTTCAAAAAATGTCTTATTTTTGCTCTGAATTAGCTGGCTTTAGCTTCTAATGGACCTTGATCCATCAATTTCGAAAAGACTAGCTCTCTGCTATCAAAATCCTTTCTATTCTTGTTGGTGCTTGGAAGTCAGCATTGTATCATATTAAATATTGACCTTCATTCTGTAAGCTGCTTTGTCTTGACTCACATGTAGCTCTTGAGTCAACTTCCATGCAATTTTGTACATCTGAAGTTTGGACACCAAAGGTTTCAGCAGCAAGTGGTAGTAGATGCCCTAACACTGTATATAAAAGTAATAGCCCCTGTACTCTTGATCTATACTCTTTTCCCTATTCATATATCTCAGGGTCAGATCTGTTCACTTAAGGTTTCATAAGGAGCTGTTTTGTTCAGTTTAGCTATTGCAAGTTGGCCTCATTTGCCCACCATGGCAATCCAGAATGGCTGCTGTCTCGTGGTGTACATCAGTCTTTTGTCATGAGATGTCGTACCTTCTGCCTGGCTCTGCTGAAACACATACTGTTCTAAGAACATTTCTCCAAGTGATTGGGGTCAACCCACAAATGACATTTCCCCACGCTGTTTGTTCTTTTTCCAGTTTGTTTTATCTGCAAACACAGAGACGTGGGAATTCATCTACAGATGTTGCCTTCTTTCTGTCGTTTTCACCAAGGACACGTATATAGATGAGATTTAATAATAATCTTTGGTCAGGGTAGGAAGGTAGAAGATATCATCATGGAGCAGGCAGCTGCCAGTGCTGCTTAGCTTTGTCTGGCCGATCCATCAGGAAGTTTCTGAAACAGATCCAGAAAATCCACGTGGAAACTGACGTAGAGAGAGCCTGTGCCAGTCTGCTGTTCTGGTCCCTGCTAAGGGTTTATGCCAGAGGAAAGGAGCTGAAATACAGAACCTGGGAGAAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007078:ENSGALT00000033272:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(10.3=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]