MmuINT0057669 @ mm10
Intron Retention
Gene
ENSMUSG00000048120 | Entpd1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:MGI Symbol;Acc:MGI:102805]
Coordinates
chr19:40736750-40741602:+
Coord C1 exon
chr19:40736750-40736884
Coord A exon
chr19:40736885-40738822
Coord C2 exon
chr19:40738823-40741602
Length
1938 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTTTTCCCTTCTGTTAACAGATC
3' ss Score
11.88
Exon sequences
Seq C1 exon
ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG
Seq A exon
GTAACTTGGGGATCTATTGGGGGTGTGGGAGTTGGTAACAAAGCAGTCTTGAACTTAGAAGAGGTGGGTGTCCACCCAATTAGTTTTGATTTGGATTGGTGCCAGTTCCACCATTCCACCGGCTGGCATTCATGACAAGCCCTTCTGGGAGCAGCAGGCAGCGGTAGACTGTCTTTAATGATTGGGATTCACCGGTTCACCGTTCTGCCCACAGAACTGTAACTGGCTCTCAATGAGTCAGTTCATTCATTTAATGGTACTTCATTGGCCCCTGTCCTGGCTACAGATTCCCCCCCAAAGGCCTCTTTTGTGATCCAGGAAATGAAGAACTTGGTCTCCTATCATCCTTGCTGCTGGGGCTGTTGCTTGGCAACCTGGCCTAGCGCGAGACCTAGGAAATAACCTCCCTGCTGTGCTCTGCCACAGTGCCACCTGCAGGCATCCAGGAGTAAAGAAACAAGCAGCCGTATGACTCCAGCTTGCTGGGAAACAGCATGGTGTTCTTTGTGTCGCTAGCCCGGAGCCTGCTACTGCCTAAAATAGGTTTACCAGCTTTTAACCCACAGAGATCTCAGACAAACCAAAGCAGGACGGTAGCAGCCCAGCGCGCACACTCGCGGCACTACTGACTTCCCTGCAGATCTTGCTCACTTAAAGGAACCTTTTCCTTATTTTAACATCCTACACCTCTTCCTCTCTGTCAGTCTATTCTTTTGTTAGAAGGATCTGTTTCAGATTTGACTGAGATGCAGGGTAGTCTTGATTTACATTCTTGTTGGAATAAATGCTACTGAAGTGGTCTGATGTCTCTAAGTCAAGGTAATGACTCCCCTATCTCACACTGAAAGGAAAAAACAGTCCCTTTTCATATTATCATCAGTATGTGTCAGAGTTCGGAAGAAAGGAGTATTGTAAGTTGGCGCAATATGTGCTGAAGGCCGTAAAGCACACACATCATTTTGACGCATCACCCCGCTCCTTAGATACCAAGTATTTGGTTAAAATGGCTAAAAGGCAGTCTTCACTGGAGTGTGTTTTAAAAGATGGTAAACATATTTTAGTGATGATCCAGAAATATATTAAGGGAGTCATGGTCACCAAGTATTCCTAAGTGGATTATCCAGATACGATGTAATACTTAACTTATTTGTTTTGTAAAAAGAACAGCGACATGTTCACAGAGGACTGGAAGGACGTGTCACAAAGAAAGGACATCAGAAGTCCTGAGTGGCACCATGTGCGGAGTTTCTTTAGGCTTGTCTGTGTATGCTAACTTCTCTATGTCATCCCGAACAGCTTTTGTAATAAAATCTTTCCAAAATTGTTATGCAAATATCATCCCTATTCCTGTAAGTTCTAAGTGACTGGACATTATTTTTCTAAAGGTGAGAGGGTCAGAGGCTGCTTTATAATTTAATAAGAATCCTTTCTTGGAGAAGCACATAACCTTCTAACTTTATAAAGGTGACTTGCTGGAATTATTTCCCCACATTTTCCCTCATGAAGCCCTGGTTCCATGTGGCTTCTCTGGCCTGAGATGGATGTAAAAGACTAGAGCCAGCCATTATTCCTTCATCTTTTTACCTACTTCCTGTCACCTCTCACTTAGCACCTCAACTCATGAAATAGAAAGAAACCTGACCTTCTCTGGTCTGTTTGAATTAAGTGCTCCCAGCGGGTGAACTGGACAGCCAGTCACCAAACTCTCTGACACTCTAGACTCTAATGGTGAGGCTCCAACCTCTCTTTTAATCATTTGCTTTGTTCTCCCCTCCCCCATCACTTCCAATTGTAGCATATAAAATTAATCTATAGTTTGAACTATACAAGATGTTATCTTCTTATCGGCTACTCAGTGTTATGTGGGTGGGGATACATGAAGACTGCAAACTATCATTTTGGACCACGAACAACAAGATTTTTCCCTTCTGTTAACAG
Seq C2 exon
ATCAAAGACAGCAACGCGGGGTGGACTTTGGGCTACATGCTGAACTTGACCAACATGATCCCAGCTGAACAGCCGTTGTCCCCGCCTCTCCCTCACTCCACCTACATCGGCCTCATGGTTCTCTTCTCCCTGCTCTTGGTTGCTGTGGCCATCACAGGCCTGTTCATCTATAGCAAGCCTTCATATTTCTGGAAAGAGGCAGTATAGCAGGAGCGGCTGAAATGTGCTGGCTGGAGAGAGAAAACAACCTGCCCAGGAGGCGGGCTCCGCCCTGCAGGAAGGGAGGCCGGAGTCACCCTTTCCTGCTTACCCGGGACAGTCTAGACCAGCACGAAGCTTCTGAGGCTGCCTGGAGCCTTTCCTTGGGGTCACTCAACACCCTCTTCCTCAAGGACTTCTTGGTGATACTCTCTTGTCTTTTCCAGTTACCCTCTTCCTCCTTTGTCCTCTGTGCTTGGGCTCACAACTCTCATGGCCTGTACTTCATAAAAGAACAATGTCAACTTTGTCCTGAGTGCCACCCTGCCCAAGCTGAGCTGGCTGGAAGAGGAAACTTGGAAACTATCTCAGCCATGGCTTTGGGACGCTCCCCCCTTCCCCATGTCTCCTAATAAAGCCATGCAGTGCCTTTGGAGAGAAGAGACACAAACCCAGTCCAAGCCTGCCCTTTGGATAGGAGAGTTTTCTAAAGTAGATAAATATGTGCTAAAGCCAAAGAGTCCTTGCCAAGGAGCTTATGTGCTCGTGCAGCTAATGTGACTCAGCATCTGCTGAGAATAAGAGTGGAGACAAACACATTGTATGTTCCCGCGTGATGCCAAAATGCTACCAAGTGCAACACAAAGGCCAGAGATTTCTGCAGAGTGGATGCACATGTAGGCATTCAGGGCATAGCATGTGACAGTAGTATACACAACTAGGAAGAAAGCTACAGATACCACCCAGAATTGGAAAAAAATATATCATCTAATGCATCTTTTAGCGTTTTGTGTGGTTTTATATGTTAAAACACACATAAACATAAATTTCACCACATTTACATGCAGCTCAGTATGGAATCTTAGTACATTTACAAAGTTATACAACAATCACTATATTGACGATTTGGACAAAGTTATACAACAATCACTATATTGACGATTTGGACAAAGTTATACAACAATCACTATATTGACGATTTGGCTTTCAGTTATGTGTGTATGTGTGGGTCTGTGCACATGAGTACAGGGAACATGGTGGCCAGAAGAGGGCGTCAGTCTTTCCAAGCTGGAGTTTTAAGCAACCAGGTATGAGGTGTCCAGTGTGGGTGCTGGGAATCAACTTGGGCCCTCTGCTCTTAACCTCTGAGTTAGGAGGTTGAGTTAACCTCTCCAGCCTCTATACCACTATTATATAACATTCTATTACCAAGAACTTGGCAGGGGACAAGACCATACATTTGTTTTCTCAAACCACAAATCTTTCCACTGATGGTCAAACAGACTCTACAACACAGAGATAGCTCACTGGGTTTGAAAGCCACACCACATCTTATTGTCCCAAGACTTTGTTTAGTGAGGGGAGGCAGGCTTTTGCTCTGCCATGGTATTTATACATCAGGTGTTGCTGCTCCTCCTCATGTGTTATGCAAACACAAGCCTTATTTCCTTGTTTCATGAAGTGTTTTGTGGATAATGAATAAGTGGCTATGGACTTTTATTATGGAAATGTAAAGAGATTTTGTATCTTTCCTACCAGTATTGCCGAAAGAAGTAACTGTCGGGAGAATTGAGCACTATTGTATTCTCGCCCTAACTCAAGCTGTCTATCCTTCTCTGATCTGGGGACTGACTACTTAGGAAAATCTCCTGCAAGCTAGAAGCCAAGTGTCCTGAATCTCTTGAGTAGTCAAGTCATTTTTCCTTCTGATGTGTCTCTTCTGCTATTCACAGTTGGACATGCTGGCTAAGTTGTGGTAGCTGCTGCTGGCTGAGCGTCTGTGGTCATGTGCTATGCTTAGGCACACTGTATCTTCTGTTCTCATAGCAGTCTCCACTCAAACTCACATCTGTCTCGAGTCTTTTTTTTCCTTTGTTTTTTTATTTTTGTTTTTGTTATAGTTCTTTTCAAGATAGGACTTCACTGTGAAGTTCTGGCTGTCCTGAAACTCACTATAAATAAATACCAGGCTGGCCTCAAACTCAGAGATCCACCTGTGCTAGGATTATAAGCATGTACCACCCCATCTGGTCATTTTATTTTATTTTCTTAAACACCCTTCCACCACCACTGCTGCCAATATGTTGGAAATCAAAATTATAAGTTTCCTTTGGAGAACAAAAATATTTTTAATTACATTTTTATCTTGTTGCCCAAGTTTTTGACCAACCAAACAAAACGTCCAACATCTCAATGGAGACAATTAGGCACCACCTAATCTCAATTCTATTGGACAGAAGATTAATCCAGGGGTCATCTTTGGGTCTTCTGGGTGGAACATGTCAAATAAAATGAGCCACTACTTTCAATGTTGGGTTGCCCATTGGTTATAGTTAATTATTATTCATCTGTAGACTTTCATTCAGGACTCAGAGGCTGGTTCTGCTAACCTTGTTCCTTCAAAAGTCGGTGATTTTTTTTTTCTACGAACCTACTACAAGGGCAACCTTAATCAGCATAAATGGTTTCATTTGCATATAAAAATGAAACTATAGAACTAGGCTTTGTGTATGCACATGGATGTGTATGAGAGAGAAAAGTTTCAATTCATCTAAATAAACGAGTAAGAAATGTAACGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048120:ENSMUST00000112231:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(10.2=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(6.5=40.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACAGACAGCTCCTGGGA
R:
GGGTAAGCAGGAAAGGGTGAC
Band lengths:
355-2293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types