RnoINT0055162 @ rn6
Intron Retention
Gene
ENSRNOG00000014574 | Entpd1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:RGD Symbol;Acc:69265]
Coordinates
chr1:259811518-259819494:+
Coord C1 exon
chr1:259811518-259811655
Coord A exon
chr1:259811656-259816187
Coord C2 exon
chr1:259816188-259819494
Length
4532 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTTTCCCCTTCCGTTTACAGATC
3' ss Score
13.83
Exon sequences
Seq C1 exon
GTAAAGGCATCTTATCCTACAGTAAAGGAGAAGTACCTGAGTGAATACTGTTTCTCGGGGACCTACATCCTGTCTCTCCTTCTGCAAGGCTATAACTTCACGGGAACCTCCTGGGACCAGATTCATTTTATGGGCAAG
Seq A exon
GTAACTTGGGAATCTGTTGGGGGTGTGGAAGTTGGAGACAAAGTAGTTTTGAACTTAGAAAATGTGGGAGCCCACCCAATTAGTTTTGATTAGTCTTGATGCCTGCTCCACCAGTCCACCAGCTGGCATTTGTGTCAAGCCCTTCTGGGAACAGCAGGCAGCCATAGGCTGTCTCTAATGACGGGGATTCGCTGTTCTGCACATAGAACTTTAACTGGTTCTCAAAGAGTCAGTTCATTCATGTAATAGTGCTTCATTAGCCACTGTCCTGACTTCAGAATCCTTCCAAAGGCCTCCTTTGTGATCCAGGAAATGAAGAACTTGGTTTCTTATCAGTCTTGCTGCTGGGGTTGTTGCTTGGCAACCTGGCCTAGAGACCTAGGCTATAACCTCCCGGCCGTGCTCTGCCACAGTGCCACCTGCAGGCATCCAGGAGTAAAGAAGCAAACAGCTTTATGACCCCTGCTTGCTGGGAAGCAAAAGGGTGTTCTTTGTGTTGCTAGCTTGGAGCCTGCTAAAGCCTAAAATAGGTTTACCAGCTCTTAAAACACAGCGAACTCAGACAAATCAAAGCATAGAATCAGGACTGTAGCAGCTTCGTGCATTCTCTCATGGTAAGACTGACTTCCTTGCACACGTTGCTCATTTAAAAGAACCTTTTCCTTATTTTTAACATCCCAGACCCCTTCCACTCCGGCAGTCTATTCCTTGTGTTAGAAGAATCTCTCTTAGATTTAGCTGACATGCAGGGTAGTGTTGACTTATATTCTTTTTTTAAAAATTTTTTTTTTATTAACTTGAGTATTTCTTATATACATTTCAAGTGTTATTCCCTTTCCCGGTTTCCGGGCAAACATCCCCCTCCCCCCTCCCCTTCCTTATGGGTGTTCCCCTCCCAACCCTCCCCCCATTGCCGCCCTCCCCCCATGGACTAGTTCACTGGGGGTTCAGTCTTAGCAGGACCCAGGGCTTCCCCTTCCACTGGTGCTCTTACTAGGATATTCATTGCTACCTATGGGGTCAGAGTCCAGGGTCAGTCCATGTATAGTCTTTAGGTAGTGGCTTAGTCCCTGGAAGCTCTGGTTGCTTGGCATTGTTGTACATATGGGGTCTCGAGCCCCTTCAAGCTCTTCCAGTTCTTTCTCTGATTCCTTCAACAGGGGTCCTAATCTTAGTTTAGCGGTTTGCTGCTGGCATTCGCCTCTGTATTTGCTGTATTCTGGCTGTGTCTCTCAGGAGAGATCTACATCCGGCTCCTGTCGGTCTGCACTTCTTTGCTTCATCCATCTTGTCTAATTGGGTGGCTGTATATGTATGGGCCACATGTGGGGCAGGCTCTGAATGGGAGTTCCTTCAGTCTCTGTTTTAATCTTTGCCTCTCTCTTCCCTGCCAAGGGTATTCTTGTTCCCCTTTTAGAGAAGGAGTGAAGCATTCACATTTTGATCATCCGTCTCGAGTTTCATTTGTTCTAGGCATCTAGGGTAATTCAAGCATTTGGGCTAATAGCCACTTATCAGTGAGTGCATACCATGTATGTCTTTCTGTGTTTGGGTTAGCTCACTCAGGATGATATTTTCCAGTTCCAGCCATTTGCCTACGAATTTCATAAAGTCGTTGTTTTTGATAGCTGAGTAATATTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGGCATTTGGGTTCTTTCCATTTTCTGGCTATTATAAATAAGGCTGCGATGAACATAGTGGAGCACGTGTCTCTTTTATATGTTGGGGCATCTTTTGGGTATATGCCCAAGAGAGGTATAGCTGGATCCTCAGGCAGTTCAATGTCCAATTTTCTGAGGAACCTCCAGACTGATTTCCAGAATGGTTGTACCAGTCTGCAATCCCACCAGCAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAGTTTTTGATCTTAGCCAATCGCACTGGTGTGAGGTGAAATCTCAGGGTTGTTTTGATTTGCATTTCCCTTATGACTAAAGATGTTGAACATTTCTTTAGGTGTTTCTCAGCCATTCGGCATTCCTTAGCTGTGAATTCTTTATTTAGCTCTGAACCCCATTTTTTAATAGGGTTATTTGTCTCCCTGCGGTCTAACTTCTTGAGTTCTTTGTATATTTTGGATATAAGGCCTCTATCTGTTGTAGGATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCCGATTTGTCCTAACCACAGTGTCCTTTGCCTTACAGAAGCTTTGCAGTTTTATGAGATCCCATTTGTCGATTCTTGATCTTAGAGCATAAGCCATTGGTGTTTTGTTTAGGAAATTTTTTCCAGTGCCCATGTGTTCCAGATGTTTCCCTAGTTTTTCTTCTATTAGTTTGAGTGTGTCTGGTTTGATGTGGAGGTCCTTGATCCACTTGGACTTAAGCTTTGTACAGGGTGATAAGCATGGATCGATCTGCATTCTTCTACATGTTGACCTCCAGTTGAACCAGCACCATTTGCAGAAAATGCTATCTTTTTTCCATTGGATGGTTTTGGCTCGTTTGTCAAAAATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTATCTGTCTGTCTCTGTACCAATACCATGCAGTTTTTATCACTATTGCTCTGTAATACTGCTTGAGTTCAGGGATAGTGATTCCCCCTGAAGTCCTTTTATTGTTGAGGATAGTTTTAGCTATCCTGGGTTTTTTGTTATTCCAGATGAATTTGCAAATTGTTCTGTCTAACTCTTTGAAGAATTGGATTGGTATTTTGATGGGGATTGCATTGAATCTGTAGATCGCTTTTGGTAAAATGGCCATTTTTACTATATTAATCCTGCCAATCCATGAGCATGGGAGATCTTTCCATCTTCTGAGGTCTTCTTCAGTTTCTTTCTTCAGTGTCTTGAAGTTCTTTTTTTTTTTTTTTTTATTAACTTGAGTATTTCTTATATACATTTCGAGTGTTATTCCCTTTCCCGGTTTCCGGGCAAACATCCCCCTCCCCCCTCCCCTTCCTTATGGGTGTTCCCCTCCCAACCCTCCCCCCATTGCCGCCCTCCCCCCATAGACTAGTTCACTGACTTATATTCTTGGGATAAATGCTACTGCGTGATCTGTTGTCTCTAAGTCCAGGTAAGGACTCCCCTAAATCTGAACACTTAAAGGTTTCCACCTCATAGTGAGAGGAAAAGACAGAGTCCTTCTGCGTATTATCATCAGTATGGGTCAGGGTTTGGAAGAAAGGAGCATTGTAAGTTGGCACAGTGTGTGCTGAAAGCCGTAAAAACATACACATCATTTCGTCTCTTCATCACGTTCCTTAGATACCAAGTAACTGGTTAAAATGGCTAACGGGCAGTCTACACTGGCATGTGTTTTAAAAGATGGAAAAAATATTTCAGTAATGGTTCAAAAATATATATGGGGGTTAATGTATACCAAGTATTCCTAAGTGAATTATCCAGATACAATTTAACATTTACTTATTTGTTTTGTAAAAACAACAGCAGCACACTCACAGAGGACTGGAAGGAAGTGTCACAAAGGACACCAGAGGCCCTGAGTGGCACTGTGTGCAGAGTTTCTTTAGGCTTGTCTGTGTTTGCTAACTTCTCTACGTCATCATGAACAGATTTTGTAATAAAACCTTCCCACAATTGTTACTCAAATCCCACTCATATTTCTGTAACGTTGTGAGGGACTGGAAATTCTTTTCTAAAGGTGAGAGGGTCAGAGGTTGCTTTATAATTTAATAGGGATTCTTTCCCAGAGAGGTGCATAACCGTCCAACTTTATAAAGGTGATTTGCTAGAATTAGCTTTCCAAACTTTCCCTCATGAAGCCCTGGTTCTATGTGGCTTCTCTGGCCTGGGAAGGATGTAAAAGACTAGAGCCGATCATTGTTCCTTCATCTTTTTACCTACTTCCCGTTGCCTCTCACTGAACCCCTCAACTCATGAACTAGAAAGTGTCCTGACCTCCTGTGGTCTGTTTGAATCAAGTATTTCCAGCTGGGTGATCTGGATGGCCGGTCACCAACCTTTCTGACATTCTAGACTATAACAGCAAGGCTCTAACTGCTCTTTTTTTTTTTAAGATTTATTTATTTATTGTATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAAAGAGCATCAGATCCCATTACAGATGGTTGTGAGCCACTATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCCCCGAGCCATCTCTCCAGCCCCCCAAACCTCTCTTTTAATCATTTACTTTGATTCCCCCCCACATTCCCAACGTAGCATATACAGTTATCTAGTGTGTGAGCTATACAAAGTGTTCTCTTCTTATTGGTTACTCAGTGTTATGTGAGTGGGGTTATATGAATGCTGCAAATTATCATTTTGGGTCATGAACAACAATATTTTCCCCTTCCGTTTACAG
Seq C2 exon
ATCAAAGACAGCAACGCAGGGTGGACTTTGGGCTACATGCTGAACTTGACCAACATGATCCCAGCTGAACAGCCATTATCCCCGCCTCTCCCTCACTCCACCTACATCAGCCTCATGGTTCTCTTCTCCCTGGTCTTGGTCGCCATGGTCATCACAGGGCTGTTCATCTTTAGCAAGCCTTCGTATTTCTGGAAAGAGGCAGTATAGCAGGAGCAGTTGAAACTTGCTGGCTGGAGAGAGAAAACAGCCTGCCCAGGGAGTGGATTCCTCCCTGCAAGGGGGGCCTGAGTCACCCTTCCCTGCTCACCTGGGACAGTCTAGGCCAGCGTGAAGCTTCTGAAGCTTCCTGAGGCCTTTCCTTGGGGACACTCAACACCCTCTTCCTCGAGGACTTCCTGGTGAGCCTCTCTTGCCTTCTCCAGTTAACCCTCTTTCTTTTTTGTCCCCTGTGCTTGGGATCACAACTTTCATGATCTGTGCTTCATAAAAGAACAATGTCAACTTTGTCTCCAAGAACTAAGAGTTCTGAGTGTCACCCTGCCCAAGCTGAGCTGGCTGAAAGGCGAAACTCAGAAACCGTCTCAGCCATAGCTGTGGGACACCCCCTCCTCCCCAGGTCTCCTAATAAAGCCATGCAGTGCCTTCGGAGAGAGGAGACACATACCCATCCAAGCCTGCCCTCTGCATAGGAGGATTTTCTGAAGCAGATGAGTATGTGCTAACGTAAGAGTCTTCGCAGAGGCGCATACGTGCAGCTAATGTGGCTCTCCATCCACTGAAAATAAGAACGGAAGCAAGCAATTGCCCGTTCCTGCGTGATGCCAAAATGCTACCATGTAGAACACGAAGGCCAGAGATCTTTGAAGAGCAGATGCGCACATTGGCATTCAGGGGATAGATTGTGACGATAGTATACACAACTAGGAAGAAAGCCACGGCTACCACCCAGGACTGGGAAAATATATCCTCTAATGCATCTTTTAGAGTTTTGTGGGGTTTTTAATGTTAAAATACATATAATATAAATCTCGCCACATTTACATTCAGCCCAGCACCACTGAATAGAATTTAGTACATTTACAATGTTATACAGCAGTCACTATTTTGCCTTCAGTTATGTGTGTATGTGTGGGTCTGTGCACATGAGTACAGGGAACATGGTGGCCAGAAGGCGGCATCAGTCCTTCAGAGCTAGTGTTTTAAGCAACCAGATGTGAGCTGGCCAGTTGTGGGGGCTGGAAATCAACCTGGGGCCCTCTGCTCTTAACCGCTGAGTTAAGAGGTCAAGTTAACCTCTCAGCCTCTATTCCACTGTTACTTAACATTCTATAGCCAAGAAGTTGGCTGGGGACAAGACATACACTGGTTGTCTCAAACCACAAACCTGTCCACCGATGTCCAAATAGACTCTGCAACACAGAGATTGCTCACGGGGTTTGAAAGCCATGCCACATCTTATGGTCCCGAGACTTTGTTTAGTGAGGGGAGGCAGGCTTTTGCTCTGTGTTTGTATTTATACATCAGGTGTTGCTGCTTCTCCTCAGGAGTTAAGAAAGTGCACACCTTATTTCCCCATTTGATGGAGTGTTTTGTGGGTAGTGAATAAGTGACTGTGGATGTATGCTATGGGAATTTAAAGAGACCTTGTGAGTATTGACTCAAGAAGTAACTGTCTGGCAGAATCGAGCACTATTGTATTCTTGCCTCAACTCAAACTGTCTCTCTGTCTCTGATCTGGAGACTGACTACTTAGAGAGGAGAGTTTCCAGCAAGCTAAAGCTAAGTGTCCTGAATCTCGTGGGCAGTCGAGCCATTTTTCCGTTTTATGTCTCTTCTGCTATTCACAGCTGGACACGCTGTCGAAATCGCTGGGGCTGCCATTGACTGAGCATCTGTGGTCATGCTCTCCGTGCTTAGGCGCATGGTGTCTTCTCCTTCTGTTGTCACAGAAGTCTTCTGAAGAAGGTGGTCCTTACCGCCCCCAGTGCCCGTGGCAGAGCTGCATTCAAACTCACATCTGCCTCGAGTCTTCTTTTTCTTTTGTTTTTGATTTTTGTTATTGTTCTTTTCAAGACAGGGTTTCCCTGTGAAGCTCTGGCCGTCCTGGAACTCACTATATAGACCAGGCTGGCCTCAAACTCACAGAGATCCACCGGCCTCTGCCCTGTGCTGAGGATTAAAGGTGTCACCACCACATCTGGCCATTTTTTTTTCTTTTCTAAACACCCTTCCACCACCACTGCTGCCAATATGCTGGAATTCAAAATTACAAGTTTCTTCAGAGAACAAAAATATTTTTAATTACATATTTATCTTGTTGCCCAAGTTTTTAACCAACCAACCAAGCACAACATCCAACTCAATGGAGACAATTAGGTGCCACCTAATCTCAATTCCATTAGACTGAAGGTTAATCCCGGGGTCATCTTTGGGTCCTCTGGATGGGGCAGGCCAAATAAAATGAGTCACTACCAATATTTCAATGTTGGGTTGCCCACTGGTTATAGTTAATTATTACTTATCTCTAGACTTTCACTCAGGACTCAGAATCAGGTTCTGCTAGCCTTGTTCCTTCAAAAGTTGGTGATTTTTTTTCTACGAACCCGATCAGGCAACCAATCAGCAGAAGTGGCTTCATTTGCATATAAAAATGAAACTTTGTGTATGCACATGGATGTGTAAGAGAGAGAAATGTTTCAATTCATCTAAATAAACGAGTAAGAAATGTAACGTGATATAAACGGAAGTCTCAAAAGTACATTTCATTTTAGTGTTCTGTTAGCCAAGAGCCCTATGGGAAACAGGTGGTCTACTCCACAGTGGGAAACAAGCAGACCTTAAAAAGAGACTAAATTCAGAATACTCTCATTTCAATAACCGATCAAGCTTCCAAAATCTGTTGTGTGAAGACTAGCCACATTTCCAACACCGGCTACATGTTGGCATGTTGGCATTTTGGCAGGTTTGGAAAACTGGCATGTTCTGAGGTTTCCAAGGTAGGTAAGAGGTAAGCTCTCGGTGCCCTTTTCCTGGGGAACATTACACAAGTAGGCTAGGTAGACTGTAGCACCCCTACTGTTCTCTCATTACACACAGACATGAATGTTACCCCTAGAAAGGCTGCTGAGGTCCCAGCAGAGCATTTCACGAGGACCCTATCTACAGCTTTGCTACCTTTAAGTGACAACGGGGCCAAGACAGGTGAGGTGAGCTTCCTAAGATTCCGCCTGGTTTCCAAGATATGTCTTCATATTTGCGTTTTGCAAAATGTAAATTTGAATGTCAATAAAAATCAATGATCGTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014574:ENSRNOT00000054719:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(10.4=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(6.5=40.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]