GgaINT1012323 @ galGal4
Intron Retention
Gene
ENSGALG00000007078 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:RefSeq peptide;Acc:NP_001012925]
Coordinates
chr6:21577056-21577502:+
Coord C1 exon
chr6:21577056-21577193
Coord A exon
chr6:21577194-21577295
Coord C2 exon
chr6:21577296-21577502
Length
102 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TCTGCTCCTCTCCATTTCAGATC
3' ss Score
12.45
Exon sequences
Seq C1 exon
GTGAAGCTACAGTATCATCAAATAAAAGAAAAGTACCTGAGTGAATATTGCTTTTCTGGAGCCTACATCCTCTCCCTACTGGAAAATGGCTATGAATTCACTACAGAAAACTGGAAAAGGATCCACTTCCTTGGAAAG
Seq A exon
GTGTGTTGATTGCCACTTCTGCTACACAGCTTTGCCCATCTTCCACAGGGATGATACTGCCCTGGCACCTTCCGTCTCTGATTCTGCTCCTCTCCATTTCAG
Seq C2 exon
ATCGGCAGCAGCGATGCAGGCTGGACCCTGGGCTACATGCTGAACCTGACCAACATGATTCCTGCGGAGGAGCCTCCTGCACCTCCTCTTTCCTATGGCAGCTATGTGGGGCTGATGGTTCTGTGCTCCCTTGTGCTGGTATCAGTGATCCTGCTTGCCTGGCTTCTCTTCCACAAGCCCAAGTGCCTGCAGAAAGGGGTTGTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007078:ENSGALT00000011467:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(10.3=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(7.1=44.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCCTACATCCTCTCCC
R:
GTGGAAGAGAAGCCAGGCAAG
Band lengths:
257-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]