GgaINT0043515 @ galGal4
Intron Retention
Gene
ENSGALG00000026957 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr6:22631257-22631489:-
Coord C1 exon
chr6:22631427-22631489
Coord A exon
chr6:22631356-22631426
Coord C2 exon
chr6:22631257-22631355
Length
71 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
GTGCATCCTGTCCACCACAGACC
3' ss Score
8.18
Exon sequences
Seq C1 exon
ATCCATTGGGAAGCATCTCCAGAGAAGCAGCTGGACTGCCTGCAGAAGGGCAAGAACAACAAG
Seq A exon
GTACGGCCATCACCGGGCAGTGAGGGCCCCGTGGTGTTCCCAGGCACTAATGTGCATCCTGTCCACCACAG
Seq C2 exon
ACCGAGTGCTTCAACCACGTGCGGTTCCTGCAGAGGCTGAACACCACGCACCTCTACGCCTGTGGCACCTATGCCTTCCACCCGCTCTGCGCTTCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026957:ENSGALT00000044069:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.6=100)
A:
NA
C2:
PF0140314=Sema=FE(7.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTGGGAAGCATCTCCAGA
R:
CAGAGCGGGTGGAAGGCATAG
Band lengths:
151-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]