HsaINT0147401 @ hg38
Intron Retention
Gene
ENSG00000095539 | SEMA4G
Description
semaphorin 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr10:100973547-100977730:+
Coord C1 exon
chr10:100973547-100973609
Coord A exon
chr10:100973610-100977631
Coord C2 exon
chr10:100977632-100977730
Length
4022 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CTCTCCACCTCATCCCACAGACG
3' ss Score
9.96
Exon sequences
Seq C1 exon
ATCCACTGGGAAGCCTCCCCAGAGATGCAAAGCAAATGTCATCAAAAAGGGAAAAACAACCAG
Seq A exon
GTATGTGGTCTGCCCTGTCCCCAGCTCCTTTCCTCCCCTTCTTCCTCAATCAGGGATGCCAGGATTGTTGGGGACACAGATGGGTAGGTACAGACCTGCCAGTCAATCTCAGCAACCACAGTAAACATTGTAAGTATTGCCAGAGTGGCAAGCCATGGGCACAGCATTTTTTTTTTTTTCTTTTTTTGAGGTCGGATCTCACTCTGTCATCCAGGTTGGAGTACAGTGACATGATCATAGCTCCCTGTGGCCTTAAACTCCTGGGCTCAGGGGATCCTTCCACTTCAGCCTCCTGAGTAGCTAGGACCACGGGCACATGCCACGCCCAGCTAAGTGTTTTATTTTTTGTAGAAACAGGGTCTTGCTATGTTGCCCAGGCTGGTCTTGAACTCCTGGCCTCAAGCAGTCCCCCTACCTTAGCCTCCCAAAGTGCTGGGATTACAGATGTAAGCCATTGCCCCCGGCATCTGGGCACAGTACTTCTAATTCAACCATCTGGTGGCCTACTAGTTTGTCCCGCAGTGGCATCTTCATCTCCTCTGGGATCCCAAATAATCAAAATGGCAATAAGTAGGCTGAACGCGGTGGCTCACATCTGTAATCCCAACACTTTGGGAGGCTGAGGGTAGGAGGACAACTTGAGTCCAGGAGTTCAAGATCAGCCTTGGCAACACAGCGAGATCTGTCTACAAAAAAAATACAAAAATTAGCCAAGTATGCTGGCGTGCACCTGTAGTCCCAGCTACTTGGGAAGCTGAGTGGGAGTATCACTTGGGCCTGGGAGGTTGAGGCTGCGTGAGCTATAATTAAGCCACACATTCCAGCCTGGATGACAGAGCAAAACCCTGTCTCAAAAAAACAAACCAACAAAAAACAGTAAGTAACCTCTACAGATGCTTACTTACGATGGGTTACTTACCAATAAAACCATCATAATAAATTGAACCATTGTTAAGTCAGCAACTATCTACAGCAAGTGATGATTTAGCTATTATCTCAGTTAATTCTAAAATAACCCTATGAAATAGTATTATCCTGCATTTTGCAGATGAGAAAAATGAGTCTTTGGTCAAGGAATAGGTCAAATACCCAGTATTCCATGGACAGGCATTAATGAAGCATCAGCCCTTTCCAGCTAAAGAATAGGGTGTCTCCAGGGGTCCCATGTCTGGCTAGGTAATGGCTCCATCTGGAGAGCTTTTACAAAATAAACGGCCCTGGGCTGGGCATGGTGGGTCACACTTGTAATCTCAACACTTTGGGAGGCCAAGGCAGGAGGATCACTTGAGCCCAGGAGTTCGAGGCCAGCCTGGACAATATAATGAGACTCTATCTCTAATAAAAAATAATTAAAAAAAAATTCCCAAGATCCACTGGGCCAAGGTGGGCCAGGGGTGGTGTTGGGACAGCTCCGTTTAAAAAGGCATCTCCAAGAGCTTCCATCAAAGGCTGCCTCTTGGTGCAGCACAGGTAGAAAATGGGGCTGGGGAGGCAGATGGAACCAGGTCATGGAAGGCCACAGATGCCCAGCTGGGAGTTTGGGTTTTATTCTGTGACAGTGAACACCCTCAGAATTTGATACTTTAGAGGCTCTAACTTTAATGTATCACCCAGGTATATTATAAATGCAGATGCTAAACTTAGTAGGTCTGGGGAAGGGCCCAAGAGTCTGCAATTCTAACAAGCTCCCAAGTGAAGTTGATGCTGCTGGTCCCCAGACCACACTTTGGATAGCAAGGCTTTATAGAACAGTTCCCAAAGCATGTTCTGAGGAACATTAATTTTCAAAGGAGGGGTTTAAATGTCAAATGAGTTTGGGAAACACTACATGCCCAGTCCCACAATGCACAGCAACATCCTTCAGGCTCTAGGAAGTAAGCCCAGTAAAGATAGGTTTCACCTGTGGTTTCCAAAGTTATTTGACCAGAGAATTCCTCCCTACCCCCCTTTAAAAAATGTAAACATCCGCTGGGCACGGTGGCTCAGGCCTGTAATCCCAGCACCTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTGTCTACTAAAAATACAAAAATTAGCCCGGCATGGTGATGCACATCCATGCGAGTAGTAGTCCCAGTCACATCACCATGGTGTTGAGAGTAGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCTCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGATCATGCACTGCACTCCAACCTAGCGGCAGAGCAAGACTCCGTCTCAAAAAAAATAAAATTAAAAAAATAAATAAACATCTTGGGGAAACATCACTTTAGGAATATTTATCTGGCCCCAGGCACTGGATGGATGAAAATAGGGTGAGTCTGGAGGCAGGAAAAGCAGTGAGGAGGCTGGGGGCATCATTTGGGTCAGAGGAAGGGGCCTGAGCAGGCTTATGGAGACGGGGGACAGATGGTAGTGGCTTGTACCAGGTGAGGGAGCAGGAGGAGACACAAAGAGGCCTGTATGGATTTAAACCCTGGGTAACAGGCAAGAGGAGGAATCATTAACGTGGCAAAGGAGTCAAGAGGCTGGCAGCTGAGGGCATTTGACAGGCAGAGAAGACCAGTGTGGCTGGAGTAGGGTGAGTGAGACCAGAGGAATGGGCAGAGTCCCATCACACAGGGCTAGGAGCATGTGGGACTCTATATTCAGGTCACTGATGAGCCGATACAGTGGTGTGATCCACTTGACTTTTTTTCAGACATGGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGTTCACTGCAGCCTCGACCTCCTGGGCTCAAACAATTCTCTTGCCTAAGCCTCCCAAGTAGCTAGGACTACAGGTGCATGCCACCACATAGAGATGAGGTCTTGCTATATTGTCCAGGCTGGTCTTGGACTCCTGGGCTCCAGTGATCCTCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACACCTGGCTAGGTTTACATTTTTAGAATATCCCTTGGAAAGTGGTTGGAGAGTAGCAAAAGTGTGTTGTTTGGTAAAATATCTCTGGAAGGAAACTTCAGACAATAGTAACAGCAGTCTTCTTGGCAGGCAACCTGGGAGACAGGGATAAATGGGAGACTCCCTGTTTATAACATACCCCTTTGTACTTTCTAAGTTTTATACTATGTACATGTATTCATTGACTGAATAAATAGCTTTATAAAGTCGTTTTTATAAAAGAGAAGGTTGGGAGGAGCTATCAGGTAGCAACTGCAGATGTCTAAGGAAGAGGTCATGGTGGTCATTTGGACTGGGTGCTGGTGGTGGAGTCAAAGTGGACCAAGTCAAGAGACTTTTAGGACAATGAATTAATTGTGGAGAGGGACTGAATGTGGGGGTGAGGAAGTAGGAAGCAGCAAGGATGATCCCTGGCTTCTAGGTTGAGTCGTAGGTTGGATGAAGTGAGGTGGGAAAGACTGGATAAACAGGTTTAGGAAAGATGTAGGTTATGGAGGAGGGGATGAACTTGGCTTCTGACAAGGTGAGTTTGAAACATCCCTGGGATATCGGGTGGAGAGCAAGCTGGCATCTAGGGATAGATTTGGTTGTATCACCCCAGCGAGGAGGGCAGGAGTTCCAAGAATAGAAAGAGGTGCTGAGAAGGAGCTGGATGGGAGAGGAGAAGCACCTCAGGATGGTGGAATCCCTGGGAGCTCTTGAACCAGAGGTGGAGGGAACTGCAAGAGACACAGGAGATATTGGCAGAATGGTGTCAGGTAATCTGAGGGACAGAGGAGAGAAATAGGGTCATGTTACTGGGAGGCCAAGGACAGTGAGTTCCAGGAAATATTCTGGAGCAGTGAGAAGGATCACAGGTATCTTGGAAAGAACCGTTTGTCCTGTGGGTGGGGGCAAGAGCCAAACTACAAAGCTAGACTAATGGAGGAGGCTTCTAGTCAGGCAGGGGGCTCACAGCCCTCTCCACCTCATCCCACAG
Seq C2 exon
ACGGAGTGCTTTAACCATGTGCGGTTCCTGCAGCGGCTCAATTCTACCCACCTCTATGCATGTGGGACTCACGCCTTCCAGCCCCTCTGTGCAGCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539:ENST00000210633:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.4=100)
A:
NA
C2:
PF0140314=Sema=FE(27.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development