RnoINT0132991 @ rn6
Intron Retention
Gene
ENSRNOG00000014650 | Sema4g
Description
semaphorin 4G [Source:RGD Symbol;Acc:1310436]
Coordinates
chr1:264742869-264746092:+
Coord C1 exon
chr1:264742869-264742931
Coord A exon
chr1:264742932-264745993
Coord C2 exon
chr1:264745994-264746092
Length
3062 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CTGCCTCCCTCTGTCTGTAGACG
3' ss Score
11.04
Exon sequences
Seq C1 exon
ATCCACTGGGAGGCCTCCCCAGAGATGCAAAGCAAGTGTCATCAGAAAGGGAAAAACAACCAG
Seq A exon
GTATGTGATCTCCCTGTCCCCAGTTCTCCTTTCTTCCTCCTCAACCAGGGGTGCCAGAATTAGAGGGACACAGGTAGAGCGGGACAGATGTGCATCCAAGTGTACAACCACAATGAGTGGTGTGAGCGGCTGGCCTAGGGTAACCCTTCTACCCCAAATATCCATGGTCTACAGCTTAGCCTGTACAGTAACTTAATCCTCTTCCCAGGGCATCTCAAATTATAATCGTAACCGTAAGTAACTGCTGTAAGTGACAACTAGATCTGGTTGTAAAATAATCTGATAAAACATTGTTGTACGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAACAAAACAAAAAAAAAAACATTGTTGTACACATTTCAGTCAGTCTAAGTACCTGGTGTTCTTGGAAAGACAGTAGTCAAATATTAGTCCTTTCTAGCTAAAAGGCAGAGTGTCTGTAAGAGGCTGGGGGACCATGTCTGGTTAAGTAACAACCATTTAGAGAGTGTTTTAGGTTTTTTGCATCTACTTTTTTTTTTTTTTTTTGGAGTTTTTGAGACAGTGTCTTACTGTGTAGCCTTGACTGGCCTGCAACTCACTCTGTAGACCAGACTGGCCTCCAACTCACAGAAATTTGCCTGCCTATGCCTCCCAAGTGCTGGGGTTAAAGGTGTGTAACACCACTCCTGCTTGGAGAGATGTCTAAGAATACACATTCTTGGACCAGCGACATGGCTCAGCCTAGGCACACACATAAACACACAAAATAAACAGATAGAAAAATAAAAATGCATATTCTAAGCTAGTTATAGTGGCATATGCCTATAATTCCAGGCCTTGGGAGTTTGCAGATAGATAGACAGATAGATAGATAGATAGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGGTGTGAAACCAAAAGGGCACATTCATACTGGACATGATGGTAGCATGTGCCTATGATCCCAGCAGTTGGGAGTTAGAGGTAAGAAGATTAGAAGTTCAAGGAAAGCCTTGGCCTCAAACAAGTTTGAGGCTAGCCTGGGCTATAAGAGATTTTTATTTCAAACCAAAAGCAATATACATCCAAGGCCCACCAATGTAGAAATTCTGACTCAACAAGTCTGTGGTGTGTCCCTCTAAAATTTTCTATGAGAGCCTCCCTCAGTGCATTGTGGGTAATAGACAGAGCTAGTGGGGTAGGTGAACCAAGGTCATAAAGTCTCATAAATGTCCAGTGAAGGGTTGGACTTCATTGTGACACCGATACTCATACTGCTGGGTGCCTTCGAGGCCCTCATTGTGAATCACAGGTTCCGGATCAGTTGGTCTGAAAAGGCCCCCAGATGCTGCTACTCTAGAGAGCCAAGTAAAGCTGCTATCTCTGGTTCCCAGGCCACTCTGAGCAGCAAGGTATCGGAGAACATTTCTCAAAGCATTGTCCTGAAGGATATTCATTTTCAAAAGAGGGACTGAAGTGGTCTGGCGCGTTTGGAAAGGGAGACATTTCTACCCCACAGTGCACAGCGACATCCTTAAGGCTGTGAAAAGTCACCCAGTAGAGATAGCCTGCAGCCCAGTCTCCCTGACTACACAGTTCTCCCCAATCTGCCTTTTTTCTGTCTTAGAGAGCTACTCCAGGAATGTCTGACTCACCCCACATGCCAGATGAGTTAAAATAGACTGAGTCTAGAGGCAGGAAGGAGGGTTGAAGTTGGGGGCATGCTAGGGCTGAGGAAAAGACCTGAGCAGACCAGTACAAGGAACAAACATAGGTGACAGAGCAAGTAACAGCATATAAGAAGATAAGAAGTCTTCCATGGATTCTACCTCTGGATGAGCAGGATGATCAGAGAGAGTTGGACAGCAACCTAGGGCACCTGAGGGACAGAGGAAGCCAGTGTGGCTGGCATAGATAGCGTGAGCAGACGGGGAAGACCAGGGGCACGTGGTGAGAGCATTGGTAAGTTGCAGCCATGCCATGGTCTGTTGTACATCTGGGATGCTTTGGAGAGTCAACTGAATGGGCGCAAGAGGGCATTGACAGATGGACTATCTCTGGAGGGAAACTTTAGACGTGGTGTCTACAGTCCCCTTCTCCAGCCACCTAGGAGACAGGAACACATGACAGGCTGTCGACAACAGATCCCCTTGTCTGTTTGAATTTTACACTCTGAGTACCTTTCACTTATACTTGCCGAGTAAATAGTTGTTATAAAGAGTAGCGTAGCAGGTTAGGAGGGGGTCAGGTGGCTGCTAGGCTGAGGTAATGGTTGTCTAGACCGGATGAGAATAGTGAAGTGGACAAGTTCAAGAACCACTTGGCACAGTGACTCATGGAGAAGGACTGAGTGTGAGGAAGAGAGAGTGGGCCACAGTAAAGATGCTTCCGGATCAGAGCAAGGTGGATGGAGGCAGAGGAGGGAAAGACGAGATAAACAGGTTTAAGAGTTAAGGTTTGGGTCAGGGAAAAGGGGACTTTCCTTTAGGACAACATGAAATTAGCATTGCTTGTGAGATAATAGAAAGAGGATTTGTGGGAGCTCCAGGGTTAGGGGGGAGCATTGCTCAAAAGTAACTTTTTCCCAGTGCGCATTAGTGTTTTGCCCTACATGTCTATCTGTGTGAGGGGGTCATGTCTTGGGGTGACAGGCGGTTGTGATCTGGTAACTGAGACTGGTTCCTCTGGAAGAACAGTCAATGTTCTTAACTGCTGAGCCATCTCTCCAGCTCCTCACAAGTAATACTTGAGCTCATGTCAAGCCCCCATTCTCCTGAAACGCTCTTCTATCTTTGAACTCTGACAGAGCCTGAAAGTTAGGTGGAGGGGATTGCAAGAGGCAGAGGCAGGAGACGCAGGAAGAGTGGTGTCAGGTAACCAGAGGCATCTTGGAAAGTGTATGCTATAGGTGGGGGCAGGAATCAGACTACAAAGCTAGACTAATGGAGGTGGCTTATATCTGGGCGGACGAGTTACTTCTCTGCCTCCCTCTGTCTGTAG
Seq C2 exon
ACGGAGTGTTTCAACCATGTGCGATTTCTACAGCGGCTCAATGCCTCCCACTTCTATGCATGTGGGACCCACGCCTTCCAGCCCCTCTGTGCAGCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014650:ENSRNOT00000019956:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.635 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(27.8=100)
A:
NA
C2:
PF0140314=Sema=FE(7.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]