GgaINT0043517 @ galGal3
Intron Retention
Description
NA
Coordinates
chr6:24518147-24518563:-
Coord C1 exon
chr6:24518470-24518563
Coord A exon
chr6:24518263-24518469
Coord C2 exon
chr6:24518147-24518262
Length
207 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CGGGTGCCTGCCCTGTGCAGATG
3' ss Score
9.23
Exon sequences
Seq C1 exon
GATGCTGACAGGTTCACACTGCCCTCCCGCTTCGAGGAAGGCAAAGAGAAGTGCCCCTACGACCCCTCCCGCGGCTACACCGGCCTCATTGTGG
Seq A exon
GTAAGTGGCACTTCACCAGGTCAGGACACTTTGGGTCGCTATGGGGGCAGCCAGCCACACGGGCTCTGCTTGTGGAGGGTGCAGCGAGATTGGGTATCTCCTTCCTTCTCCTCCCGTGCCTGGGGCATGTGGATGTGGCGGCTTTGGGGCTGTCCCCACAGTCCCTGGGGTATGGTGGCCATGCTGACGGGTGCCTGCCCTGTGCAG
Seq C2 exon
ATGGTGGATTGTACACAGCCACACGCTATGAGTTTCGGAGCCTCCCTGACATCCGGAGGAACCTGCACCAGCGGCCGCTGAAGACAGAGGAGTCCCCTCTGCACTGGCTGAATGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007852:ENSGALT00000012749:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(27.7=100)
A:
NA
C2:
PF0140314=Sema=FE(33.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGACAGGTTCACACTGC
R:
CATTCAGCCAGTGCAGAGGG
Band lengths:
207-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]