GgaINT0043517 @ galGal4
Intron Retention
Gene
ENSGALG00000026957 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr6:22630365-22630779:-
Coord C1 exon
chr6:22630686-22630779
Coord A exon
chr6:22630479-22630685
Coord C2 exon
chr6:22630365-22630478
Length
207 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CGGGTGCCTGCCCTGTGCAGATG
3' ss Score
9.23
Exon sequences
Seq C1 exon
GATGCTGACAGGTTCACACTGCCCTCCCGCTTCGAGGAAGGCAAAGAGAAGTGCCCCTACGACCCCTCCCGCGGCTACACCGGCCTCATTGTGG
Seq A exon
GTAAGTGGCACTTCACCAGGTCAGGACACTTTGGGTCGCTATGGGGGCAGCCAGCCACACGGGCTCTGCTTGTGGAGGGTGCAGCGAGATTGGGTATCTCCTTCCTTCTCCTCCCGTGCCTGGGGCATGTGGATGTGGCGGCTTTGGGGCTGTCCCCACAGTCCCTGGGGTATGGTGGCCATGCTGACGGGTGCCTGCCCTGTGCAG
Seq C2 exon
ATGGTGGATTGTACACAGCCACACGCTATGAGTTTCGGAGCCTCCCTGACATCCGGAGGAACCTGCACCAGCGGCCGCTGAAGACAGAGGAGTCCCCTCTGCACTGGCTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026957:ENSGALT00000044069:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.2=100)
A:
NA
C2:
PF0140314=Sema=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGACAGGTTCACACTGC
R:
CATTCAGCCAGTGCAGAGGG
Band lengths:
207-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]