RnoINT0132993 @ rn6
Intron Retention
Gene
ENSRNOG00000014650 | Sema4g
Description
semaphorin 4G [Source:RGD Symbol;Acc:1310436]
Coordinates
chr1:264746205-264746557:+
Coord C1 exon
chr1:264746205-264746298
Coord A exon
chr1:264746299-264746443
Coord C2 exon
chr1:264746444-264746557
Length
145 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
CCTGGATGTCTCTGCCCCAGATG
3' ss Score
7.61
Exon sequences
Seq C1 exon
GATGCTGAGGCCTTCATCTTGCCTACTAGCTTCGAGGAGGGAAAGGAGAAATGTCCTTACGACCCAGCCCGTGGCTTCACGGGCCTTATCATTG
Seq A exon
GTGAGCAGACACTCCTGCAGTCAGTCCTCAGCCGCAAGACTCTATGATCTGAATGTGAATCCTGTTGCTAGGACTTGCCATTTGTGCATGCCATGTTTCCTATTGCACACAACATGTATCTCATGCCTGGATGTCTCTGCCCCAG
Seq C2 exon
ATGGAGGCCTCTACACAGCCACGCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACCGAGGAGGCACCCATGCACTGGCTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014650:ENSRNOT00000019956:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.141
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.2=100)
A:
NA
C2:
PF0140314=Sema=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGAGGCCTTCATCTTGC
R:
CATGGGTGCCTCCTCGGTTC
Band lengths:
194-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]