GgaINT0043596 @ galGal3
Intron Retention
Gene
ENSGALG00000005086 | F1NYX5_CHICK
Description
NA
Coordinates
chr6:16589259-16589591:-
Coord C1 exon
chr6:16589537-16589591
Coord A exon
chr6:16589364-16589536
Coord C2 exon
chr6:16589259-16589363
Length
173 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
ATCATGTCTTTTATTTGCAGAAT
3' ss Score
9.68
Exon sequences
Seq C1 exon
GTTTACATCAGGCAGTACTACAAGTTATCACATAAACACAGACCCCAACATAGAG
Seq A exon
GTAAGCATCTGTCTGTTCTACTTAAACCTAAAAAGAGCTTGTTTGCCTGCAATTACATCTTTATCAAAGAGAGAAGGCTTTCAATAATATGCAGCTAAAACTTAGTTTGCAACTGCATTTCACTTGACCGCTCAAGTGTTTTACCTCTTACTAATCATGTCTTTTATTTGCAG
Seq C2 exon
AATGCCAGTGTCTGAATGGCGGAACCTGCATTACCTATCGCTTCTTCAGCCAAATTAAGCGTTGCCTGTGCCCAGAAGGATATGGTGGACTTCACTGTGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005086:ENSGALT00000008157:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAGGCAGTACTACAAGTT
R:
ATTTCACAGTGAAGTCCACCA
Band lengths:
154-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]