GgaINT0043596 @ galGal4
Intron Retention
Gene
ENSGALG00000005086 | PLAU
Description
urokinase-type plasminogen activator preproprotein [Source:RefSeq peptide;Acc:NP_990774]
Coordinates
chr6:15065648-15065980:-
Coord C1 exon
chr6:15065926-15065980
Coord A exon
chr6:15065753-15065925
Coord C2 exon
chr6:15065648-15065752
Length
173 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
ATCATGTCTTTTATTTGCAGAAT
3' ss Score
9.68
Exon sequences
Seq C1 exon
GTTTACATCAGGCAGTACTACAAGTTATCACATAAACACAGACCCCAACATAGAG
Seq A exon
GTAAGCATCTGTCTGTTCTACTTAAACCTAAAAAGAGCTTGTTTGCCTGCAATTACATCTTTATCAAAGAGAGAAGGCTTTCAATAATATGCAGCTAAAACTTAGTTTGCAACTGCATTTCACTTGACCGCTCAAGTGTTTTACCTCTTACTAATCATGTCTTTTATTTGCAG
Seq C2 exon
AATGCCAGTGTCTGAATGGCGGAACCTGCATTACCTATCGCTTCTTCAGCCAAATTAAGCGTTGCCTGTGCCCAGAAGGATATGGTGGACTTCACTGTGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005086:ENSGALT00000044471:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAGGCAGTACTACAAGTT
R:
ATTTCACAGTGAAGTCCACCA
Band lengths:
154-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]