HsaINT1027250 @ hg38
Intron Retention
Gene
ENSG00000122861 | PLAU
Description
plasminogen activator, urokinase [Source:HGNC Symbol;Acc:HGNC:9052]
Coordinates
chr10:73912041-73912322:+
Coord C1 exon
chr10:73912041-73912068
Coord A exon
chr10:73912069-73912214
Coord C2 exon
chr10:73912215-73912322
Length
146 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CCCACCTTTGTTCTCTCCAGCGA
3' ss Score
9.41
Exon sequences
Seq C1 exon
GGCAGCAATGAACTTCATCAAGTTCCAT
Seq A exon
GTGAGTATCCACCCCTACAACAGTTGGCTGCACAGACAAGTTGGGAAGGCTTCAGGGGACATCCCCTCCCTGCCCTCTGCTGCAGGGCTGCGCCACCCCTTACCACTTCCACTCCCCCTCGCTTACCCCACCTTTGTTCTCTCCAG
Seq C2 exon
CGAACTGTGACTGTCTAAATGGAGGAACATGTGTGTCCAACAAGTACTTCTCCAACATTCACTGGTGCAACTGCCCAAAGAAATTCGGAGGGCAGCACTGTGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122861:ENST00000372764:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCAATGAACTTCATCAAGT
R:
TATTTCACAGTGCTGCCCTCC
Band lengths:
135-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains