GgaINT0044277 @ galGal4
Intron Retention
Gene
ENSGALG00000007014 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr6:21795620-21796013:+
Coord C1 exon
chr6:21795620-21795766
Coord A exon
chr6:21795767-21795868
Coord C2 exon
chr6:21795869-21796013
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CACTCTCTGTTCCCATTCAGGCT
3' ss Score
9.34
Exon sequences
Seq C1 exon
CGGCATGGGCTGAAAGTGCTGCCACGGGACCCCTACTCCTTCACCCCGCTGCTGGAGGACAGGAGCCCGCCCCGCTCCTTGCTGATGGGCCATGATATGGCCCAGACCCGGAGGCAGATTGCCCAGTTCTCCCAGAAGGATGCTCAG
Seq A exon
GTATGAGGGCAGCACCTGGCCCAGGAGCCCCCCTGCCCATCAGAGCTGTAGGGATGCTCATGGTGGGGTATCCCCTTCTGGCCACTCTCTGTTCCCATTCAG
Seq C2 exon
GCTTACCCTAAGTATGAGGTGTTCATGGGGCGCTTGGTGTCTGCCATCAACCCGCTGCTGGATGCCCCCCCTGCGGATACAGCTGCCCTAGGGCAGGGCTCCCTGCTGCAGAGGCTCCGTGCCCTGTGGCCCCTGCTGCAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014:ENSGALT00000011349:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGGACCCCTACTCCTTC
R:
GAGCCTCTGCAGCAGGGAG
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]