RnoINT0121135 @ rn6
Intron Retention
Gene
ENSRNOG00000015807 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:RGD Symbol;Acc:1303232]
Coordinates
chr1:261973968-261976302:-
Coord C1 exon
chr1:261976147-261976302
Coord A exon
chr1:261974122-261976146
Coord C2 exon
chr1:261973968-261974121
Length
2025 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
ACGTGTAAGCTCTGTTACAGGCC
3' ss Score
3.1
Exon sequences
Seq C1 exon
AAACATGGGCTGAAACTTCATCTGAGAAATCCCTACTCCTTCACCCCCATGCTGGAGGAGGGCACGCTGAGCAAGCCGCCCAGGTCCCTCCTGCTGGGCACAGACGTGGCTGAAAACCAGAAGCAAATCTCTCAGTTCTCCCGGAAGGATGCTCAG
Seq A exon
GTAGGGAAGGCGAGCGGGGACTGTAATCCTCCCTCAAAACCCCAGAGCAAGCTCTTGAGATGAAGTGGATGCCAAGGCTGTCGCTGAACAGACTGCTTTCCCTGGACAACTCGGCCCATGCTAGCCTTTGACCGTAGGCACTCTGACCAGGATTGGTGTGTTCAGTGGTTAAGAGCAGTGGACACTGGGACTCCCGGAGCTGCATGTGTCCCTCTGAGGCTGCTGACCAGGTGGTCTTGGCATGCTGAGTTTCATAACGGCCTCTCTGGAATGCGTTACCCCTCTGCTTTTCCTCAGAACCCCACGTGTTACCCATCCCAAAGCCCATGAAAGACCACAAGAAGGACTAAGGACAGGAAAATGTTCTTTCTGTCTGACATCAATCCATGACAACCAAAGCAAGAAAGTGTCCGTGGTGGTGCAAATCTTCCTCCCGGAACACACACCAGATGGGGAACGCCTGCTGCTTCCTGCAGCTCTAGAGCAGGGACACATTTGCTGACGTTGTCCAGATGAGTCAGCGGGTGATGTAATGGGCCTGCTATGGCGGCGTTCTGCACTTGAGGAATTATTCTAGAATGGCCGTTCTTGTACCACCCCGGATGCAGGCTGTAGGTATACCACCAAATCCTATCTCAGTGGAGGCTTATAAAAAAAACCCTAGGTTGTACACTCAATGCCCTTGCCTTCTGGTGTGCTAATCTAGCACTGGGCAAAGCCTGGACGGCCACAGGCATGCAGCACTCACACGTTTACACAGAGCATCCTGAGCCTGGCCATGTTAGCTGCTGTGACAGAGGATAAACTAGACATAGCTTAAAGGAAGAAGGACTCGTCTGGCTTGTTGTTTAAGAGGGAACGGTTCATGAGGGCAGGAAGGCATCACGGGAGCAGCTCGGCTGTGGCAGCAGGCAAGTCAGGTGCTGGTTATTTCTCCTCAGCTGTCAGGAACAGAGAGCTGTGTGGAAGCAGAGCCAGCCTGTGACCCCCAGAGCTTGCCTGTAAGCCCTACATCCTGCCCAACAGTCCCATGTCTCAAAGCTTCTTCAGCCTCCCCCAGATAGCATCACTTCATCCCAAACCGTTCCAATGCCTGTACCTGTGGGATGCTCCAATGAAGATCGTAGCTCTGATTGATGATTGGAACTGTCCTCTCACCCCCCACACCCTCAGCGTCATGAGCATCTGATGTAGTGTGCTGAGGACCCCTCGTCCCAGTGTCTGTGGCCCTACTTGCTAGTGACCACACAGTGGGAGGGGTGGGCCCATTTCCCAAAGGACCCCAAGACCTCAGTCTATGCTTTTGTGCTTGAAAGCTGTCATTTTGCAAGTCTGGCCTAGGCAAAAACTATATTATTAGTGCTAATAAAAGTTTAAAAGGTCTCTACTACAGAACTGTATGTAACACCACAATTTCCTGGGTTTACCCATATATATCACTGAGCCGAAATTCAGCATCCCAGGGTAAGAATCAATAGGAATTTCTGCTGGTAGCAACTTCCATCAGTGTCCCTATCCCCCAGCCTGTGTGAGGGCAGAGTCTGGAACTGTCTGTGGACAGTTCTGCTGTGGGGGCTATTGGGTAAGAAGACACAGCCTTCTGTGGCTATATGGGATGAGGCAAACGTGTCAGGCACTCAAAGAGAGCGGCCAGCATGCTGGGAGGAGATCTGCCTTCCACCAGTCACTAACAGGACATAGAATTTCTGAACGTTTTTTATCACAGAGCCTGTACCCTCAGACGTGTGTTTTCAGTGGCTAGTATTGGCCGATGTTGACCCTTGGCCTTGGTGGCTGTCCTCTTGCCCAAGCTGCTCTGCCCCTCACGTATGACACAGGAACCTGGAGATGAGACCTGAGCAGAGCCAAGCTGAGCCGCAGCTGGGGGTGTGGCCCGAGTTGCCACCAGGGCTGCACTACGGGGGATGGCAACCATATGGGAGTGTGGCCCAGCAGACCAGGCAGGAGAACAGTATCCTATGGGATTCCGGGCTGTAGAATGCTAACGTGTAAGCTCTGTTACAG
Seq C2 exon
GCCTTTCCCAGATACGAGGAGTTCATGAAGCGCTTGGTGCTAGCCATTGACCCCCTTCTGGACGCAGCTCCAGTGGACATAGCAGCCCTCCAGCATGGCTCCCTGCTGCAGAGGCTCAGGGCACTGTCCACCCTGAGGCCCCTGCTGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015807:ENSRNOT00000021257:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]