MmuINT0130066 @ mm9
Intron Retention
Gene
ENSMUSG00000060224 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:MGI Symbol;Acc:MGI:1921830]
Coordinates
chr19:42814825-42817153:-
Coord C1 exon
chr19:42816998-42817153
Coord A exon
chr19:42814979-42816997
Coord C2 exon
chr19:42814825-42814978
Length
2019 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
ACGTGTAAGCTCTGTTGCAGGCT
3' ss Score
2.73
Exon sequences
Seq C1 exon
AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG
Seq A exon
GTAGGGAAGGTGAGCGGGGACTGAAGCTTCCCTCAGCAGCCCACACACAGCAGGCTCTGGAGAGGAAATGGATGCCAAGGCTGTAGCTCAGTGGTCTGCTTTCCCTGGACAGCGCGGCCCATGCTAGCCTGTGACCTGAGGCACTTTGACCGGGATTGGTGGACAGTGCTTAAGCACAGTAGACACTGGGACTCCTGGCGCCCGCTGCTGGTGTTCATCTGAGGCGGCTCGCCAGGCGGTCTTTGCAGGCTGAGTTTCCTAACGGAATCCCTGGAATGCATTACCCCTCTGCTTTTGCTCAGAACCCCACGTGTTACCCATCCCAAAGCCCAATGAAAGACCACAAGAAGAACTTAGGACAGGAAAATGTTCTTTCAGTTTGACATCAATCCATGACAACCAAAGCAAGAAAGCGTCCGTGGTGGTGTGCAAAGCTGCCTCCCAGAACACACACCATATGGAGAATGCCGGCTGCTTCCTGCAGATCCAGTGCAGGAACACGTTTGCTGGCTTTCTCCAGATGAGTGGATGGGTGATGTAATGGACCTGGTATGGCGGGTTTCTGCAGTTGAGGAAATATTTTAGAACGGCCGTTCTTGTACCAGCCCAGATGCCGGCCGGAGGTGTACCACCAAATCCAATCTCAGTGGAGGCATGTTTATAAAGAAAAACCTAGGTTTTTGCCCTCGATGCACTTGCTTTCTGGTGTGCTAGCCTAGCACTGGGCAAAGGCTGGACAGCCACAGGTGAGCAGCTCTCTCCCCTTTACCCAGAGCATCCTAAACCTGGCCGTGTTAACTGCTATTCTCGAAGCTGTAACAGAGAGTAAACTACAAGTAGCTTAAAAGAAGAAGGCCTTATTTGGCTTGTTTAAGAGGGAACGGTTGGTGATGGCAGGAAGGCGTGGCAGGAGCAGCTCGGCTGTGACGGCAGGCATGTCAGGGGCTGGCTATTTCTCCTCAGCTGTCAGAAACAGCTCTGTGGAAGCAGAGCCAGCCCGTATCCCTCAGAGCTTGTCCTACATCCTGCCAAACAGTCCCATGTCTCAGAGCTTCTTCACCCCTCTCCCAAATAGCATCACCTCGTTCCAAACTGTTCCAGTCGCCTGTGGGCAACTCGGATGGAGATGTAGCGCTGACTGACAATTGGGACTGTCCTCTCACCTCCCATGCCCTCAGCGTCATGAGCATCTGATGTAACATGCTGAGGACCCCTCTTCCCAGTGCCTGTGGCCCTACTTGCTACTAAGACCACACAGTGGGAGGGCTGGGTCCATTTCCCAAGGAACCCAAAGACCTCGGCCTATGCTTTTGTGCTTGAAAGCTATTTTGCATGCCTAGTCTAGGCAAAAATGTATTATTAGCAATAATAAAAGTTTAAAAGTTCTTCACTACAGAACTGTATGTAATACCACAATTTCCTGGGTTTATCTCTATATATATATATAGCTGAGCCAGACTTCTGGTAGCAACTTCCCTTGGTGTTCCTATCACCTAGCCCCAGTAAGGAGGGAAGAGTCTAGAACACGGCTGTAGAGAGTTCTGCTGTGGGGGCTGCTAGGTGAGAAGATAAAGATTTCTGTGGCTATATGGGATGAAGCAATGTGTCAGTCTGAGAGACCAAATGAGAGTGGTCAGCATGCTGGGAAGAGATCTGCCTTCCACCAGTCACAAACAGAGGACATGAGAGAATTTCTGATCTGTTTTTGTCACAGGGCCTATACTCTCAGACACACGACCGTTTTGTGTGGCTAGTGTGGGGCCATGCTGACCCTTGGCCCTGGTGGCTGTTCTATTGCACAAACTGCTCTGCCCTTCACATATGACATACAGACCTGGAGATGAAAGAACTGAGCAGAGCCAAGCTGAGCCACAGCTGGGGATATGGCCCGAGGAGCCACCAGGGCTACACTCTGGGGAATGGCAGCCATATGGGAGTGTGGCACAGAGGACCAGGCACGAGGACATTCTCCTGTGGGATTCTGGGCTGTGGCATGCTAACGTGTAAGCTCTGTTGCAG
Seq C2 exon
GCTTTCCCCAGATACGAGGAGTTCATGAAACGCTTGGTGCTAGCCATTGACCCCCTACTGGATGCAGCTCCAGTGGACACAACAGCCTTTCAGCATGGCTCTCTGTTGCAGAGGCTCAGGGCACTGTCCACCCTGAAGCCCCTGCTGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060224-Pyroxd2:NM_029011:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: