GgaINT0044287 @ galGal3
Intron Retention
Gene
ENSGALG00000007014 | PYROXD2
Description
NA
Coordinates
chr6:23677097-23677589:+
Coord C1 exon
chr6:23677097-23677217
Coord A exon
chr6:23677218-23677311
Coord C2 exon
chr6:23677312-23677589
Length
94 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
CCACTCCCGCTGCCTTTCAGGAG
3' ss Score
8.25
Exon sequences
Seq C1 exon
AACATCTTTCATGGAGGGATGTCTCTGGACCAGCTCTACTTCACCCGGCCAGCACCATCCTACTCGACCTACCAGTCTCCAGTCCCAGGCTTATACCTGTGCGGGAGCGGAGCCCACCCTG
Seq A exon
GTAAGCAAGGCTGAGCATGGGGCTGCAGGGGGAGGATAGGGCTACATAGACAGGCGCAGACCCCTGGTGCAGCCCCACTCCCGCTGCCTTTCAG
Seq C2 exon
GAGGAGGTGTGATGGGTGCAGCGGGACGCAATGCAGCCCAGGTGGTCCTCAGGGACTTCAGGCGCCTGCGGTGGCAGCGGTGAAACTGACTTCACCTGCACAGGTGTGTGGCTGCATTTGTTCCCAGTGGCCCCTGCTTCCCATCCGTGCTGAGAGCCAAGCATGCAAGGTAGCATCCCCTATGAACAGAGCAGTGCAGGCTGGTGCAGCGTCCCAAGAGGTGTCAACTGTCCCAGTGCTGTGACACCCACAGAAATAAACCCAGCCATGGACTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014:ENSGALT00000011349:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCAGTCTCCAGTCCCAGG
R:
GAACAAATGCAGCCACACACC
Band lengths:
176-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]