RnoINT0121131 @ rn6
Intron Retention
Gene
ENSRNOG00000015807 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:RGD Symbol;Acc:1303232]
Coordinates
chr1:261961379-261962448:-
Coord C1 exon
chr1:261962328-261962448
Coord A exon
chr1:261961670-261962327
Coord C2 exon
chr1:261961379-261961669
Length
658 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GAGCAGACCTTTGGTTCCAGGAG
3' ss Score
2.73
Exon sequences
Seq C1 exon
AACATATTTCATGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGACCAGTGCCCCAACACTCTGACTACAGATGCCCCGTGCAAGGCCTATACCTCTGTGGGAGTGGGGCCCATCCTG
Seq A exon
GTGAGTGACCTACTTCCTGTGTGGGCTGTAAGGGCTTGTGGGGTGAGTGTCTGTCCTAAGCTTGCCTACAGAGGAGGATGTGGGAAGCCATCACTGGGTTCCAAAGCCTCTGCACAGGGGAAGCACACAGCAGTACCTCTGCCAGGCTGCTGCCACCCTCCTCTCTTGGTAAACATCTCCTCCCGCCTAGGTGTAGGGACACATTCTGATGAAGGGTGGAGGCGGCTTCTCCAAAGGCGGGGAAGGCTCACAGTCCTTAATTTGTCACCTGTCTTTGAGACCAGAAAGGATCAGTAACGTTTCTTAACCTTGAAATTCCTCGCTATACCAACTCCAAACCTAGGTGACTTCACTGTGGTTGTCATCTCCTGGCGACGCCCTCTCTGGCAAGTGGGTGAGGCTCCCATAAAGAGCTGCCCTGATTCTTACACTTCAGCTTTGCCTGCTAAACTGCCAGGTGCCCCCCACCCCCCGCTGAGGCAGGGAGGTTGGCAGAGTGTGGGACAAGAGACCAGTGCGGCTACATCCTGCCTACTCCCCCCAGCTGTGTGTGTGGGAGCTACAGGGAGCCTTGGCAGTTGTTCCAGATTGTGGTTGCTGTCCGTGAGTCCTGCCCTGTCCCTTTCTGGTGGGCTTCTGAGCAGACCTTTGGTTCCAG
Seq C2 exon
GAGGAGGCGTCATGGGAGCGGCTGGACGGAATGCAGCCCACATAGTCTTTAGGGACCTCAAGAACATGTGATGCTGGACCAGCTCTGAGCCCAAGGAGAAAAGTTTTCCCTGCACTTTGAGCCGCCTAGCAGGCCATCTTCCCATGATGCCCTGCTTCCCATGATGCCACTGGAGACAACTGCACTAGCAAGGCGCCACTGTTTCTTAATCAAGGACTCAGTTACATTTAACACAATCTCACCCGTGCCCTTGGATTAGCTGGTTTTGTCTGGTTAAAAACAATGTTTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015807:ENSRNOT00000021257:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCCTGGACCAGCTCTAC
R:
GGCACGGGTGAGATTGTGTTA
Band lengths:
352-1010
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]