MmuINT0130062 @ mm10
Intron Retention
Gene
ENSMUSG00000060224 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:MGI Symbol;Acc:MGI:1921830]
Coordinates
chr19:42725858-42727777:-
Coord C1 exon
chr19:42727657-42727777
Coord A exon
chr19:42726990-42727656
Coord C2 exon
chr19:42725858-42726989
Length
667 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GAGCAGAGCTTTGGTTCCAGGAG
3' ss Score
0.06
Exon sequences
Seq C1 exon
AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTG
Seq A exon
GTGAGTGACCTACTTCCTGTGTGGGCTGTGAGGGCTTGTGGGGTGAGTGTCTGTCCTAAGCTTGCCTACAGAGGAGGATGTGGGAAGCCATCACACAGGGAAAGCACAGAGCAGCATCTCTGCCAGGCTGCCACAGCCCTCCACTTTGGTAAACATCTCCCCCCACCCAGGTGTAGGGACACATTCTGATGCAGGGGTGGAGGCAGCTCCTCCAGGGGCTGCGGGAGCCTCGCTGTCCTTAATTCGTCACCCATCTTTGAGACCAGAGAGGATCAGGAATGTTCCTTAACCTTAAAATGCTTTGCTGTACCAACTCCAAGCCTAGGTGACTTCACTGTGGCTGTCATCTCCTGGCAACGCCCTCTCTGAGATGTGGGTGAGGCCCCCATAAAGAGCTGAGACTCCCACCCACTCCTGATTCTTACACTTCAGCTGTACCTGCTAAATTGCCAAGTGCCACCCCCCCCGGCCCCCCCGTTGAGGCAGGGAGGCTGGCAGAGAGTGGCACAAGAGGCCAATGTGGCCACAGCCTGCCTGCTTTCCCATGGCTGTGTGTGGAAGCTGCAGGGAGCCCAGGCAGTTTGGCATTTGTTCCAAATTGTGGCTCTGTCTATGAGTCCCGCCCTGTCCCTTTCTGGTGGGCTTCTGAGCAGAGCTTTGGTTCCAG
Seq C2 exon
GAGGAGGCGTCATGGGAGCGGCTGGACGGAATGCGGCCCACGTAGTCTTTAGAGACCTCAAGAACATGTGACGCTGGACCAGCTCTGACCCTGGGGAGGAAAGTTTTCCTGCACGTTGAGCCACCGAGCAGGCCATCTGCCCAAGACGCCCTGCTCCCAAGGAGGCCATTGGAGACAAACTGTACTAGCAAGGTGCCATCTGTTCCTTAATCAGAGACTCAGTTGTATTTAGCACAATCTCACCTGTGGCCCAGGTGTCCATGGATCAGCTGGGTTTGTCTCACCTGTGCCTCAGGTGTCCATGGATCAGCTGGGTTTGTCTTTTTAAAAACCATGTTTTGTATAGAGACTGCTTGTATTGTTTTTCTGTGTCTATAGCTTGGGGGAACTTGGCACACTAGTTGGACACAGTCCATCTAATGCATGGAAAAATTTGGACCAACATCCAACTGTTCCCTTCTTATCAGCGGGTTTCCCACTACCAACTGATTGAAGGCCTGGCCTACCAATGCCCAGTCAACTACCGTCATATTCCTGTCACTATAAAACAAACTCACAGTGACTCACAAGCTCTCTCTCGGGCCCACACGATGGGCCCGAGCAAAGGTCTGCATCTCAAGCCGTCAAAACCTCTGGTCAGGAAATAGCAGTTGAGGGTGACTGTAGAGTGGGCTCACCAGAAACTGCAGGAACCGCTTTCTACCTTCTGCCTGCCAGGTACTAAATCTGCCATGTCCGACACTAAACCTTTCAACCTAAAAAGGCCTCATTCTGCAGTGAGTTGGGCTGTCACTGCCAGAAAGAAACACAGGACAGTTCCATGAATAACAACTGTGCTGGCAGCCTCTGCATGCGGGTCAAAGGCCACCATCCTAAGCTGTCCCCTCTGAAGGTCAGACAGAGGCTTCCTAGGACTCTTACACCTACCTTCTTCTGCACAGTCAGTTACCACTGGACAACACTCTGGTCAGCCTTTCAGGCAACCAGGAGACATTTTCATATTCTTAATGTGATGTATGTATGTCTTTCTTTGAAGTTACTTTATGTCAAAAACTATCCAGTGTTCTTTTGAAAACATTTTAATAGCTGTCTGATATTCCCTCGTGGCAAATAAACCATAATTTACTGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060224:ENSMUST00000076505:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCAACACTCTGACTACA
R:
CAGGTGAGACAAACCCAGCTG
Band lengths:
356-1023
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types