GgaINT0044598 @ galGal4
Intron Retention
Gene
ENSGALG00000009693 | CPXM2
Description
carboxypeptidase X (M14 family), member 2 [Source:HGNC Symbol;Acc:HGNC:26977]
Coordinates
chr6:31289514-31290893:-
Coord C1 exon
chr6:31290714-31290893
Coord A exon
chr6:31289812-31290713
Coord C2 exon
chr6:31289514-31289811
Length
902 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
GCTGTTTCCTTCTCTCCTAGGTG
3' ss Score
10.98
Exon sequences
Seq C1 exon
GGCTCAGAATTAGGGGGCTGGTCTTTAGGTCGATGGACTCAGGATGGCATTGACATCAACAATAATTTCCCTGATTTAAACTCTTTGCTCTGGGAGTCTGAAGATCAGAAGAAGAGCAAAAGGAAAGTTCCAAACCATCACATCCCCATTCCTGACTGGTACCTGTCTGAAAATGCCACC
Seq A exon
GTAAGTAACACTGGCTTTGGAAAGATGGGAAAATGAAGTTGGGGGCAGGTTGAAAGACTGAGCTTTGTATTTCTCGTGGAAAATGCAGCTTGCTGGTGATGCTGCATGCCTGCTCTAAGACAACTATCTGGGCTTCCCTGATAGTCGATAGAAATAAAATTGCACCACAAAGATGCAGTTGGGTCCCATGTTTTAGCAGCTGCCCTTGGAAAGGGAGCAGCTTCCTGCAGTGCCATCTTTTCTCTCGGCTATTGGGAGAGCCTGGAGGACTTGATACCCAGGTTTGAGTCCTAGACAGGTAAAGAAATGGAAACATAAACCCAGAGCTGGGCTCATCTCTGAGTCAGGCTGCTCCCCAGCTTTGCAGCATGGGTGAGCTCTTTTACAAGGTATGCACCATGTGGATTTCTCCTGGTTTTTTTTTGTTTTGTTTTTATGTTGCTTGAAATAACATTGCAGTGGCTTACGCTAGCCCTGTTAAAATTTAACTTCTTTTTTGCATGGCATTTGAAATAACTATAGTGGCCAAGCTTCCCCTGTTTTGCAGGGAAGGCACTTAACTGTGGCTGTTCTGTGGGCTTTAGAAATATTGCCCTGCTTAAAATCCTTTATTTCCCAAACTCATTCCAGCTGATGCCATTGGGCACAGCGTTATGATCCGACAACTTGTTGGTTCTAAATCACTCCTGCAGGATAAAACAAATATGCTAAGGTTTGCGTTAGCTTTTATGGGTTGTCAGTGGCCTCCAAAACGTGTCTGGCAGGCACTGTCATTAAAATATTTTCTTCTTGGCCACGTCTCTTGTGCTGACTACTCACTCTGTGCGAAGCATCTTCCAGTCTGCCTCCAGAAGATCACCAGATCTCACGGGCCACAACAAAGCTGTTTCCTTCTCTCCTAG
Seq C2 exon
GTGGCAGTGGAGACGCGAGCAATCATTGCATGGATGGAAAAAATTCCTTTTGTGCTGGGGGGCAATCTGCAGGGAGGAGAGCTGGTCGTGGCGTACCCCTATGACATGGTGCGGTCCCTGTGGAAAACGCAGGACTACACGCCCACACCAGATGACCATGTCTTTCGCTGGCTTGCCTACTCCTACGCCTCCACACACCGGCTGATGACAGACGCGAGGAGGAGAGCGTGTCACACAGAGGACTTCCAGAAGGAGGATGGCACAGTTAATGGCGCCTCTTGGCACACCGTGGCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009693:ENSGALT00000015779:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(19.1=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(32.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCGATGGACTCAGGATGG
R:
TGTGTGGAGGCGTAGGAGTAG
Band lengths:
351-1253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]