MmuINT0041935 @ mm9
Intron Retention
Gene
ENSMUSG00000030862 | Cpxm2
Description
carboxypeptidase X 2 (M14 family) [Source:MGI Symbol;Acc:MGI:1926006]
Coordinates
chr7:139246414-139249496:-
Coord C1 exon
chr7:139249317-139249496
Coord A exon
chr7:139246712-139249316
Coord C2 exon
chr7:139246414-139246711
Length
2605 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TTAAATTTGTATACTCCCAGGTG
3' ss Score
6.73
Exon sequences
Seq C1 exon
GGTTCCGAGTTGGGAGGCTGGTCCCTGGGACGTTGGACCCATGATGGCATCGATATCAACAACAACTTTCCGGATTTAAACTCGCTGCTCTGGGAGGCAGAGGACCAGCAGAATGCCCCAAGGAAGGTCCCCAACCACTACATTGCCATCCCTGAGTGGTTTCTGTCTGAGAATGCCACA
Seq A exon
GTGAGTGAAAACAGTTCTAATTTGTGTGTCAGAGGAGGGTGAAAGGTTGCCTGCTGGTATCTGCAGAGGATGAGGATACGGCACAGACAAAGAAGACAAATACATCTTTCTTATCTTTTCTGACAGTAGAGAACAGTATGCGTTACTACCTTCATGCTGGTTTTGTGGTAGAGTCATTTGATTGAACTTCTATAATTACAGAGTTGTAAACATACATACATACATACAAAAAAACACCCCCGGAATGCATGAATGTTTTACTATCATTATTCTTATCCATGCCAATTACACTTCCATGACATCAGCTTTCACTAGTTGCTAGGAATAGACAGTGTCATGATACACACAAGACAGAGTTCTGGTGACCTGTGGCCATTTCACTTTTGGTGATGTATGTACCAGAACACAGTACAAATGTATTCAATGCACATGGCTCCTTACAGCAAAAGACTGGTTACTTAGTGTCATTATCACATGTACAGACAAACAATCTCTTCATCGTAAAGTGGGTAAGACAGAACAATAGCATTTATCAAAATAAGGAATGAGTTTTAGGAGCATAAACTGGATCAAAAAAAAATTGAGAAGACAATTAAAACCAAGCAGTAAGATTTTTATGTCTTCACGCACAGTTAAAACGAGACAGAGAGGGAAATGAGAGCTAGTCATTTAGGGTAGGAAGCCTTTTCTGATGGGAAGCAGTGGGCTGTGGGGGTGGGGCTGAAATTACACAGGTGTATAGCAACTCCTACTGAGACCTGGGTCTTGAGTTGAACTGTGGCTTCACAGCATGGGCCAGTATTGATTCTGTGCCCTGAGCTGTGTTCCATAATTAACCTGACCCAGGGATTATGGTGTGCTTCAAGCCCGGAACCAGGTTTAATGAACCTCTGCAAGCAGGCTGCGGCCACGAGTCAGCGTTTCTGTCTGCACAGTAAGTGGCCCTCTGTGCTCCTGCGCTGGCATCAATCTTGTCTTGCTGAAATTATCTTTGTGTGACAATCGGCCATTTATTATAATCTGACTCAATTCACATGCCTGTTAAACCACGCCAACCTTTTAAATTAATCTCGTAACATTAACAGTTTTCCTCTTTAATATCTTTGTTTTCCTCTTTAATATCTTTTTTTCCCCCATAAAAAGTCAAAAGTACAAAAGTGAAGGAAGCTGTAGAGGGCTCGTAGGCACTCATGCCAGCAGTGACATGGGCCAACTCACGCTTCTTCCTAAAGCAGACATGTCATCATGTGATTTTATTTGTAAACGCTTTAACAGGCATCTCTAAATGGCAGGAGCCGTCCTTTACATCCACGGATAGTACCATTATCATGTTAAAATAAGTCATCTCTTTTCCAGGTTTATTGTGTCCATGTGTGGGTGTGGGTGCATGCATGCCATGAGACCCCTTGGTGGGGGGTGGGGCGGATGACAGCTTTCAGGACTCAGTTCTTTCTCCATGCTTTGGTCAGACCAGATCTTTCCTGCTCTTTGCATCACACTGGCACACCCAGGCTAACTGGCCAGTGAGCTCCTTCTCCGTAGGTCTCTTGTCTCTGCCTCCCATCTCTCTGTAGGCTGATTACAGATGTGGATTACCACGTCTTGATTTTAAGTAGGTTCTGAGACTTGACCTCCAGTCAGGCTTGTAAGGTGAGGCTAGCAGTTTTATCTGCTGAGTCCTTCTGGGTCCCAAATTAGGACTTTTTGTTTGTTTTTGTTTTTATATTTGTTTTAATTTAATTGCAAGGCTAGGGTCCCATTTCATTTCTTATACCAATCAGAGAACCCCCCTCCCCCCATTTCTCTCATCCCACTTTACCCCCACCCTCATCTGCTTAAATCTAGATTCAAATGAAACCCATTCCTTTCTCCTGTGTTCTAGACATTTTAGGTCTCTGCTAACAGTCCATGCTCCATTCCTCCCTCTTCTCCTCTGTCTTGCTTACCTCTGCATATCACCTTTGGTTGGCATGAGAAGCAGGGTTTCCTGCCTCTGGGAGCTGGGACTGTGTTCCTGAAATGTCACATCCTTCTGTTTTCTGGAAACTGAGAGTGACTTTAAGACTGAAGTCCACAAACTCCGGCCCACACAGCCCTGCCTTCCTGAGTGGCTTCGGTCCACACACATTTGCACTTTGTCCATGGTATTTCTTTGCTACAGGAACAGAGCTGGGTAGCTGTGACAGAGACTGCCTGGACCACAAAGCCCCAGAGTCACCATCTAGCCCTTTGCTAGAAAAGTCAGCTGATAGGTTGGCTAGCAGCATGGTGAGATTGAGGCTTGTGGTTTGGGGTTACTCCTGGTTGTGTGTCTTCCTCCTGCTGTCTGTAGTGAGTGAACACCCCAACTCAGGAGTTCATTGGATTAATGGAATGATGCCACTTTCATCCTGATGAAGTATTCACTAGAAAATCCTGCCATGGAAACTCAGCATTTCCCTGGCCTTCCCTATTGTAATCCATTGCTTCTAAAATGTCCAGTTTCCCCAGGGCACAGTTTGAGATTTTGAATATTGCTGAGATTACTCCATAAAATTTCCATTTTTTTTGAAAGCTAAGGAAGCGAAGCAACTTCTTTCTGTTTGTTAAATTTGTATACTCCCAG
Seq C2 exon
GTGGCCACAGAGACCAGAGCCGTCATCGCCTGGATGGAGAAGATCCCGTTTGTGCTGGGAGGCAACCTACAGGGGGGTGAGCTGGTCGTGGCATACCCCTATGACATGGTGCGGTCCCTGTGGAAGACCCAGGAGCACACCCCAACACCTGATGATCATGTGTTCCGCTGGCTGGCGTATTCCTACGCCTCCACTCACCGCCTCATGACAGATGCCAGGAGGCGAGTGTGCCACACGGAAGATTTTCAGAAGGAGGAGGGCACCGTCAATGGGGCTTCCTGGCACACAGTGGCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030862-Cpxm2:NM_018867:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(19.1=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(32.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: