RnoINT0041730 @ rn6
Intron Retention
Gene
ENSRNOG00000015902 | Cpxm2
Description
carboxypeptidase X (M14 family), member 2 [Source:RGD Symbol;Acc:1310955]
Coordinates
chr1:204060725-204063793:-
Coord C1 exon
chr1:204063614-204063793
Coord A exon
chr1:204061023-204063613
Coord C2 exon
chr1:204060725-204061022
Length
2591 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TTAAATTTGTATACTCCCAGGTG
3' ss Score
6.73
Exon sequences
Seq C1 exon
GGTTCCGAGTTGGGAGGCTGGTCCCTGGGACGTTGGACCCATGATGGCATTGACATCAACAACAACTTTCCGGATTTAAACACGCTGCTCTGGGAGGCAGAGGACCGGCAGAACGCCCCAAGGAAAGTTCCCAACCACTACATTGCCATCCCTGAGTGGTTTCTGTCTGAGAATGCCACA
Seq A exon
GTGAGTGAAAACAACTCTAATTTGTGCGTCAGAGGAGGGTGAAAGGTTGCCTGCTGGTATCTGCAGAGGATATAGCACAAAGAAGATAAATACATCTTTCTTATGTTTTCCAACAGTAGAAAACAGTTCTGGGTCATTACTACCTTTCAAGCTGGTTTTGTGGAGATTCTTTGTAGAGTCATTTGATTGATCTTCTATACCTATTTGTAAACAAACCAACAAACCACCCCCGGAATGCAAGAATTTTTACTCTCATTTCCTTATCCTAATTATACTTTCACCAATTGCTAGGTAAAGACAGTGCATGCATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATGGCGTTCTGGTAACATGTGGCCTTTCGCTTTTGCTAATGTGTGTACCAGAGCACTGAACGAGAGAGTTCAAAGCGCATGGCTCCTTCCAGCAAAAGGCTGATTACTTAGTGTCATTGTCACATCTGTAGATAAACAATCTCCTCATCGTAAGGTGGAAAAGACTGAGCAATAATATTCATCAAAATCAGGAATGAGACTTAGGAGCATAAACTAGGTCAAAAAATCGAGAAGACGAGTAAAACCAAACAGTAAGATTTCTGTGTCTTCATGTTCAGTTAAAACAAGTCTCTTTTAGGGTGGGGAGCCTTTTCTGTGGGAAGCAGTGGGCTGGGGGAGGAAGGGGCTGACGTCACACAGGTGCATAGCAACTACTACTGAGACTTGGGTCTTGGGTTGAGCTGTGGCTTCACAGCGCGGGCCAATATTGATTGTGTGCTGTGAGCTGCGTTCCATAATTAACCTGACGCAGGACTTATGGGATGCTTCAAGCCCAGAACCAAGTTTAATGAAGCCCAGCAAGCACACGGCAGCCCTGAGTCAGCATTTCTGTCTGCTCAGTAAGTGGCCTTCTGCGCTCCTCTGCTGGCAACAATGTTGTCCTGCTGAAATTATCTTCATGTGACAATTGGTCACTTAATTATAATCAAATACATATCTGCATTAAACCACATCGACCTTTTAAATTCGTCTTTTAACATTATCCGTTTTCCTCTTTAATAACTCCCCCCCCCCCCCATAAAAAGTCAAACGTACAAAAGTGAAGGAAGCTGTAGTGGGCTCACAAGCCCTCAGGTCAGCAGTGACATGCGCCAACTCACGCTTCGTCCCAAAGCAGACGTGTCGTCATGTGATTTTGTTTGTAAATGTTTTAATGGGCATCTCCAGAGGACAGGAGCCATCCTTCACATCCACAGACAGTACCACTGTTGTGTTAAAATAAGTCATGTCTTTTCCAGGTTTATTGTGTCCGTGTGAGGATGCACATAGGCCATGGCACGCCTATGGGGTGGGGTCAGAACAACTTTCAGGAGTCAGTTCTCTCTTTCTGCTTTGCTCAGACCGGGTCTTTCCTGCTGTTTCCACCACACTGGCAATACCTCAGGCTAACTGACCAGTGAGCTCCTTCTCAGTCAGGTCTCTTGTCTCTACCTCCCATCTCATAGGCTGATTACAGATGTGGAAGACCACATGCTGATTTTAAGTGGGTTCTGAGAATTCAACCTCAATCAGGCTTGTGAGGTGAGACAAGCAGTTTTATCTGCTGAGTCCTCCTGGGTCCCAAATTAGGTTTCTTTGGTTGGTTGTTTGTTTTGGTTTGATTTTTTTGTTTTGTTTTGTTTTGTTTTAATCGCAAGGCTAGGGTTAAGGCTAGAGATCCCATTTCATTTCTTATACCGATCAGTCAACCCCGCCTCCCCATTTCTCTCATTCCACTTCACCCCCATCCTCATCTGCTGAAATCTAGATTCAAATGAAGCCCGCTCCTTTCTTTTGTTATGAAGACACTTTATGTCTCCGTTAACAGGCCTCCCTCCATTTCTTCCTCTTCTCTGCTGTGTTGCTTTTCTCTGCCTATCACCCTTGCTTGTGCATGAGCGGCTGGGTTTACTGCCTCTGGGAGCAAAGACTGTGTTCCTGAAATGTCACAGCCTTCTGTTTTCTGGAAACTGAGAGTGACTTTAAGACTGACATCCACAAACTCCGGCCCACACAGCCCTGCCTTTCTGAGCACATTTGCACTTTGTTCATGGTGTTTCCTTACTACAGGAACAGAGCTGGGTTGCAAGGACAGAGCCCACCTGGCCCACAAAAGCCCAAATGGTCTAGCCCTTTGCAGAAAAAAGTCAGCGATGCCTTGGCTAGCAGCCTGGTCAGATTGAGGCTTGTGGTTTGGGAGTGCTCCTGCTTGTGTGTCTTTCTCAAGCTGTCTGTAGTTAGTGAAGACTCCAACCCAGGAGTTCATTGGACTCATGGAATGATGATACGTTAACCCCCAGTGAAGAATTTACTAGAATATCCTATCGTGAAAGCGCAACATTTCCCTGGACTTCCCTTTTTTAATCCATTGCTTCTAAAAAGCCCAGTTTCCCCAGGGCACAGTTTGAAATTTTGAATATTGCTGAGATTACTCCATAAAATTTCTAATTTTTCAAATACTTGCCTGTTTTGAAGGCTAAGGAAGCAAAGCACCTTCTGTTTGTTAAATTTGTATACTCCCAG
Seq C2 exon
GTGGCCATGGAGACCAGAGCCATCATTGCTTGGATGGAGAAGATCCCGTTTGTGCTGGGAGGCAACCTACAGGGGGGTGAGCTGGTTGTAGCATACCCCTACGACATGGTGCGGTCCCTGTGGAAGACCCAGGAGCACACCCCGACACCCGACGATCACGTGTTCCGCTGGCTGGCTTACTCTTATGCCTCCACTCACCGCCTCATGACCGATGCCAGGAGGCGAGTGTGCCACACAGAGGAATTTCAGAAGGAAGAAGGCACCGTCAATGGGGCTTCCTGGCACACCGTGGCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015902:ENSRNOT00000051853:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(19.1=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(32.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]