GgaINT0044676 @ galGal3
Intron Retention
Gene
ENSGALG00000021039 | E1BRU7_CHICK
Description
NA
Coordinates
chr6:11952333-11954546:+
Coord C1 exon
chr6:11952333-11952495
Coord A exon
chr6:11952496-11954397
Coord C2 exon
chr6:11954398-11954546
Length
1902 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
GCTGCCCACTTGTGTTGCAGAGA
3' ss Score
8.29
Exon sequences
Seq C1 exon
GTTGACAGGTACCTGTACCACATGCGTCTCTCCGATGATGTCTTGCTGGACGTGATGGCTCGCTTCCAGGCCGAGATGGTGAAGGGCCTGGGCAGAGACACCAACCCCACGGCGACAGTCAAAATGCTGCCGTCGTTTGTGCGCTCGCTTCCTGATGGCTCGG
Seq A exon
GTGAGTTCCCTCTGCTCCACCACAGCAGTGCTGCTTTAGGGAACAGATGGGTTGCTGCCCGTACTCAAGGACAGTACAGCAAGAGCACAGGGCAGCCGGTGGCCTAGTTTACTGCTGTACCTCATGCTCAGCAAGCAGATGTCTGCTGAGGAGACAAAAGACTTGTGGGAGCTGGCAAGGCTTTTTCCCCACACCAGGTGCATGTAGGCCAAGTGCTGCTTGTTGGAGAGAGAGGCTGAGTTATAGATCTTAGGAAGCAGCCTCTCTAGCCTGCAAATGTGGCTGTACCTATTGCGGACTTCGTAACAGGAGCTGTGGCTGGACATGGCAAGGGCAGCCTCTACAGCCCAGAGCCTGCAGTGCAGCGCGCTGTGGGTGTGGGGATGTGAGCACTGCTGGTCCTGGTTACTGCCCAGGTGCAGGATCCAAAAGCCAGTCCTACTTGCGGACATGCACACCTAAGGTAGCTCTGAGGCTCCTGGCTCAGCTGGTGTCAGCAGTGCAGGCTGACAGATAATTTCTTGTCCTAAGCAACATAATTAGGTTGTTGGGGTTTTTTTTCCATATAGCCAAGTCTTTGAATTTTTGTAAGGCCTGTAGGTGAGGATGCAGTGCATAACACCTGTCCATGCAGAAAAATGTAAGAAATGCTGCTCTGTACCTCATTTCCAAAGGAATTAATTTCTTCCGAAGTTAATCTGCTCGCAGTTAAATGGGAAATAATAGCTTTTATGGCATAAAGGGAACATTTGGTGGTAGTCCAAAGTTTGAAGGCAGTCCTTTGAAATTAGGGATGTCTAGACAGAGTATATATGATTCCTCAGAAAGTGCCTGGCTGGAGTTGAGTGCCCTTCCTCTGACTGCAGCCTTCACCAAAGAAAAATAAATGTTAGCTTAGCCCTTGTTACCTTTGTGGCCATCAGGTCCTGTGGTCTCATATGACACCGATCCTATCCGGAAGTTGCAGGGAGCACCTAAGGCCAGGAGACTTGGGAAATTACATGTCCTGTCAGTATTGTTGCAAAACTTTGTGTTCCTCAGGGACAACGTTGGACAGTGATCTCTTGGCCTGTGTAGCCTTTCTTCTGTACCAAGGACATTGGTGTCACACTGGGCTACGTGTTATTGATACACCGATTTTAGGCATGACATTGATTTTTCTATTTTTGTTCCTTTGCTGAATTCCTTATTGGCTATTCTGTTTCCAAAAATACTTCCAGCAGGTTCGAACACCTCCAATTTGGCTGGATTATGCCATTTGCAATGGCAGTGAACTTTCAGGTCTTGCACTGCCCACAGTGATACTACCTGGAATGACCTGTGTGGAGCATCATTTTTAATGATTTAGGGATTAATGATCTGACTAATGTCATGGTTTACTGAGTAACCCGGTTTGTCTCGTCACCTCTATCATAAGTAGCTGTGGTATTACAGGTGTAATTTCCCACTTTCTTCCCTTTCAGGGTCATGTTTGATAAAATTTAGTCAGCTGTTTCAACCACGGAACAAAGATCGTGCAGGGCTATGACATGCCATTGCGTTGTCCTTTGAGGAAGGGCCTTTTCATGTGGGGAGGGTAGATAAGTGCTTTATTGTAGCAGTGAGTACAAAATGTCCTTGGGCCTTTCTTTCCGCAAAGTTCATCCTTCTCCAGCTTGAAAACGCGCTGCTGTGAAAGGAGCAGAGTGGGCAAAACCAGGCTGCTAAATAAAAAAGAGCATATTAATTAGGGCATTGCGGGATTGCTACCTTCCTGGTGGTGGTCCCAGGCCTGGGGGGGGGGGGGTGAGATCCTGTGGTCGTGGTGACGCAGGAGCTCTGAGCTGCCTTCTGGGGGATGCTTGCTGCTCTGGACCACGCTTGCCAGCCATCACCACTGATGGCTGCCCACTTGTGTTGCAG
Seq C2 exon
AGAAGGGTGATTTCCTCGCTGTTGACCTGGGTGGCTCCCAGTTTCGTGCCCTCAAGGTGAAGGTGTTTAATGATGGGAAACAGAGCAGCCAACTGGAGAGCGAGTTTTACCCCACACCAAAGGAGGTCATACAGGGCAGTGGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021039:ENSGALT00000006717:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(26.2=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTACCACATGCGTCTCT
R:
CTCTGCTCCACTGCCCTGTAT
Band lengths:
302-2204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]