BtaINT0072354 @ bosTau6
Intron Retention
Gene
ENSBTAG00000033398 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr28:25758056-25762741:+
Coord C1 exon
chr28:25758056-25758218
Coord A exon
chr28:25758219-25762592
Coord C2 exon
chr28:25762593-25762741
Length
4374 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
GGGGTTTATATTTTTCATAGAAA
3' ss Score
4.85
Exon sequences
Seq C1 exon
GTGGACAGGTTCCTGTACCACATGCGCCTCTCCGATGAGACCCTTTTGGACATCATGGCTCGGTTCCAGGCGGAAATGCAGAAGGGCCTAGGGAAGGACACCAACCCCACAGCCTCGGTGAAGATGCTGCCCACCTTCGTCAGGGCCATTCCAGATGGCTCGG
Seq A exon
GTGAGTGAGGCTGGGGGCGGCCAGGGACACTGCTCCTCCTGGCTCCCTTTTGGCTGATGGGTACCTGAAGTTGTCTCCTGTTTCCTGGCTTACCTCTCCAAGCCCTCTCTCCACATTCCCCCATCCCACCTTCCCGACTCCAGTAATGTTCCGTATCAAAAGTTTGGAGCCAAAGTTCCGATACATCTTGCTTTCTCCCTGCCTGCCTTGGCCCTACACATTCTGTTCCCTCTCCTGCTAGAGCATCCCAACACTCTTCCCCTTATGAACACCAACCTGGCCTTCCCACCTGAGTGTAGAGATCACTGACCACCTGGGAAGCAACCCATGCTGGGTTAGGCGCTTGTCACCCTGCTGTGTATGCGAGTCTCGCCACGGGGCCAATGCGACCTGAGGGCAGAGTCTGCATCTTCTTCAAACAGTGCTTTGGCGCTGCATAGTCCTGGATGCAGACTAGGCCTGAAATGTTTGCAGAACGGATAGTAAATGGCATTTCACTCCTAAGTACCTAGGTTCTGGGCTACAGATAGCAAGTAGTGGAAGACAGAATAGTGGAAAAAATACTAAATGGTAATTGAAGAAACCTGAGTTCTAGGCCCAGATCTGTCATTGATCACTGACCTTTGGCAAAATGTTTAGCTTTGATTTTTCTATCTGTAAAATGTGTTCTCTCTTGGTGCTATAATAAGTTAGCACACACTTAGTAGCTCTAAACAACACACATTTATTCTCTTGCAGCCCCAGAGGTCAGAAGTCTGAGATGGGTCTATAATCAAGGGCTATCATCAAGATGTGGCTGAGCTGCATTCCTTGCGGAGGCTTTAGGGAAGAGTCTCTCTGTTTCCTTGCATTTCCCAGCTTTTCCTATGTTCACTGGCTCATGCGCTTCCCATCTTCAAGCCCCAATGTAGCATCTTCAGATCTCTGACTCTGACCCTTCTGCCTTCCTCTTGCATACTTTAAAACCCTGTGATTACTTTAGGCCAACTGATGAACAATTTTGATTCTATCAGCAACCTTCGTTCCTTCTTGTCACAGAACCTAATATATTCATAGGACCCATGATCAGGATGTAAACATCTTGTGGGAACTATTATTTTGCCATCAAACTGCTCTACTCTCAGCCTCTGGGTAAAGCCATAGGAAGGAAAGAAATTGGTACCTACTACACACCTCCTGTGGTCATGCAGTGCTAGGGACTCGCTGTCTCATACAATCCCCATAAGAACCCCATGGTGGAGCTCTTATCCCCAACTCAGATGAGAGCAATGAGGGCCAAGGGGCTACCCCCAATGTCAGAGTCCCAGTGCTCCAACCAAGCTCCAGCAGGGGCTTTGGGGCTTTCGAGGGAGCAAGGACTAAAGTTTAGGGAGCTCTCGGGGATGTTTGATTGGATTAGCAGGGCTCTGGGCCCCTCTGGGAGAACACATAGGCCAAAGTTGCTTGACTCTGCCATGTGAGAGGCTCCTGGGAACTGTGATGGGAAAGACCCATTCCCTCGCTGGTGGGGGTTGTGCGGCATGGGCACTGTACCATGTGGAGAAACACAAGCTCTGAAGAGAGACAGTCCTGCTTTGAAATCTCTGCTGAGTTCTGACACTGCTCTTTGAGAATGCTGAGAAGACTGGGGTCCTTGATGGGTCCTCTGGGGCCATTCAGAGAAGCACCTGGTCATAAGGTATGTGTGTGTTGGGAGCACCAGCTCAGAGTCCTCCTGGCTTCCAGTGCTTTGGCTCTTCTTGTGGAGGTGTGTCCCCAGAAGCAAGGGAAAGTGGCCTTCAATGGTCTGGAGGCTGCTGGCTGCTTCAGGAAGGTTTGGAAGTGAAACTGACCAAGTTTTAGAAATTACCTCCTCATCAGGCCAGGAGATGCCACCTCCTGTCTTCATGGTCTCCTCTCACTAACACAATCGGTCTCACCAGGGATTCTGCAGCAGTGAGGTCCCTGGGCCCAGAGTCCTTGTGGAGCCATATGCCTTTGTAAAGTCCCAGAACCACTGTACCCCTGTTCTCATTAGTAAAAGAGATGTGGCCAGTTTGTCCACCAACTTGTAGGTTTGGTAGCATCAGATGAGGTCATGTACAAGGAATGCTCGAAACTCTCCAAGATGTCCCAAGTGCTATGGAGCTCCTGTGAGCTCCTGGTCTGATTTTAGGATTATTTCCTAATCTCTTGGGGCCTCCATTTCTGAAATGTGTGCAGTTTCCAGAAGAAATCCTTCAGAGCTGGCCCACTCTCTAGTTTCCCCTCCTCCATCTGCACCTGCCTGAGGCGGGTAAGCTGATAGAGCCTTAGTTACCTCCCAGCTGTCAGTCGGGGAGCTGCACTTGACTGTTCTTACAAGAGCCTTAAAAGCATGGTTGTGATTTGTGCCTTCTTCTCCACCAGTCACAAGGGAAGGGGGGCAGGAAGTGCCCATCTTGTGATTTGAATGTGTCAGTGATTCCTTAGGCCCCTCTCCAGTGGCCTCTCTTCTTGACCTCTGCCTCCAGGCTGCCTGGAGGCTAAGCCTTGTGGGTGAGACCAGCAGCCTCTGTGTTATCAGCTGAGGGCCCCAGACGTCTGCACTGGGGCAAAGGTTCCACACTCGCCTGAGCTCCTGGGGGACGTCCCTGGCGGCTCAGACGGTAAAGTGTCTGCCTACAACGCGGGAGACCTGGGTTCGATCCCTGGGTTAGGAAGATCCCTTGGAGAAGGAAATGGTAGCCCACTCCTGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCAGGTAGGCTACAGTCCATGGGGTTGCAAAGAGTCAGACACAACTGAGCGACTTCACTTTCACTTCAATGGGATAATTCCTAAATATACAGTTTCCCAGGCTTCTCCCCTTGGAGATCGTGAATCTCCAGAAATCTACTTGTTCAGTCCCTGTGCACCTTTGGGAGATGCTGCACTAGAGGGTGGAGAAGGAAGAGGGGCACAAGCCAGACATAGCACAAGCCAGGGCAGGAAAGCCCAATGTCTATGGTTTCAGCGTACCATGCGGCCACCTTGGCTACCAGCTGATCTCTGGTGTGCAGGACACTTCCATTTCTGTTTTTACTAGCAATTTCCCTCTGTGTTTTATTTCACATTTTACAAGGAATGAATCCGAATGGCCAGCTGGTCCCTTAGATTCAGGCAGCTGTGTCTAGGGTCACATGGTACCAAAAAAAGGCCATTTGGGTGACCAGATTGGTGTGCATGGAGTTTCATTTATACATGCCTTGGGTATATGTCATGAAGTATGCCTGGTCATGTGCAGCCAGTTTTCCAGCACAGTTAATTTTGTACAAAGACTTGTTGGTTCAAGGGTCTGCACACATGAGCTCTCATCCCGTATCTGTGGCTGATGCTAAAGACACTGGCAGGGTCCTAGGCAGGAATTCTGGCTGGCTGGATGCTGATGACTGAGTTGAAGTCATCAGGGTGGGCCACCCACCCCAACATGTGTGTCATTTCTACCATCTTATTAATAGCATCTGTCTTATACTGGGCTAGGTCATGTTACATTTTCTCCTCTTGGAATGACTCTGGCCCAAAATATTAAGCATCCTTGGCTCCTTAAGGGCCAGGATTAGGTGTTTGTCTCCCTTCCCTCCTAGAGTATTTTCTCTCTGTCCGTGAGACTGAGGCTTGTATGAAGCTGGTTTCTCTTCCCTGAAATCCTCCTGTCTTTTCTGCCTTATTTGCGTTTTGTGGAGTATCAACTCTCCCTTCCTGGTTGTGGTGGTTGTGGTGTGCCAGAATAAGCTCCATCCTCGAGGCTCGTTTCTTTCTTTCTTTTTTAATTTTTGGTTGTGCTGGGTCTTTTTGCTGCCTGCAGGCTTTCTCTAGTTACGGTGTGCGGGCTTCTCATTGCAGCAGTTTCCCTTGATGCGGAGCACAGGCTCTATATGCATGGGCTTCGGTAGTTACAGTGCGTGGGCTCAGTAGTTGTGGTGCGTGGTCTTAGTTGCTCTGCAGCATGTGGAATCTTCCCAGACCAGGGATTGAACCCGTGTCCCTTGCATCAGCAGGCGGATTCTTATCCACTGTACCACCAGAGAAGTCTCTCAAGGCACATTTCTATTACCGCCTGCCAAAAGTGCATTCACATTTCCCCTCTCCCAGTGAACACATTTATTCCCAGTGGGCACGGCTGAGGCGCCAGAGGCAGGCAGACTTGGGTCACACCCCAACTTTGCCCTTCACTGGGAGGGTGCAAATCAACAGTCACACTTCTAGAGTCTTGGCACACAGGCATACCTGGCTTGTGGGGGTGTGAGAGTTCATGTTTATCACAGTCCAACTTCTAATGCAGAGCTTGTGTATAGCAGACTCTCAGTAAATGATAACTTTTGGGGGTTTATATTTTTCATAG
Seq C2 exon
AAAATGGGGAATTTCTCTCCCTGGATCTTGGAGGATCCAAGTTTCGAGTCTTGAAGGTACAAGTCTCTGAAGAGGGGAAACGAAATGTCCAGATGGAGAGTCAGTTTTACCCAACACCCAATGAAATCATCCGAGGGAATGGCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033398:ENSBTAT00000047474:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.060
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(26.2=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]