RnoINT0005119 @ rn6
Intron Retention
Gene
ENSRNOG00000049045 | AABR07045032.1
Description
NA
Coordinates
chr20:32042463-32048100:-
Coord C1 exon
chr20:32047938-32048100
Coord A exon
chr20:32042612-32047937
Coord C2 exon
chr20:32042463-32042611
Length
5326 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ACTGTTTTCATTTCTCCTAGAAA
3' ss Score
8.73
Exon sequences
Seq C1 exon
GTGGACAGGTTCCTGTACCATATGCGGCTCTCGGATGAGACCCTTGTGGACATCATGGCCCGATTCCAGGCCGAGATGGAGAAAGGCTTAGGGAAGGACACCAACCCCACTGCCTCAGTGAAGATGCTGCCCACATTCGTCAGGGCCATTCCAGATGGCTCAG
Seq A exon
GTAAGCAGGGCTCAGGCTGACTGATGGCTCAGGTAAGCGGGGCTCCGCTGACTGAGACTTCCCTCCTTTCCCACACCAGCTTCTTAACTGATGAGTCCCCATCGCTTGCCTCTGTCCCTTTCCAACCTCCTACTTCCCTCTGCCCCAGTCCCACTAACTGAATACTTTTGGGGTCCACATCAGAGGCCCTCAGATTTTCCTCCGCCCACAGCATCTTCACTCATTCCCTTTGCTCCCAAGCAGTGGAGTCCCTGACCCCGCCCCCGCCCCCGCCCCCCCCCCCCGCCCTAGATTTTCCAGATGCTGCTCAGAGATCACCCATTGCCTCTCTCTAGGAAGTGTCCCCACTCTAGGATAGGGGCTTCTTAGAACCTTTGTCACAGTTGTGGGTGACAGTCTCCAGAAGCCAGGGATTAGTTACCACACTGTTCTGAGCACTTACCAAATGCTAGCCCCTGACACAGGCATTGAATGAGTTAGTATGTGATCTTTTCTCCTGGGCCTTTAGATCCCAAGGCAGAAACAGTAAGCGCTGGAAGGACCTGTGAGGGGAAGTAATACTGAGCGCCTATGCAAGGAATCTGGGCTCCAGGCCCAGCTCCCACACACCTTGGAGACTCCAGGCAACCATTAGCCTTGGCTCTTCCGTCAGATGGTGGAAGGTGGTCCATCCATATGCTGGGCTGGGTATCGAACGCTGGGCCTTGGCCATGCTCTTGGCCATGCTGGACAAGTTCCTGCCTCCGAGCCACATTCTCAACTCCTATGTATTGGGTTACTGTTGCTGTTCTGCTCTGGGGGTGAGCCCAGGAACTATGAAGTAGTTCACCCAGGCACAGCTGATGGCCCTAAGAAGTCTCCATTTAGGACCTGGGCTCTGTGTTTGCCTGAGCATAAGATCTGCCCTCCTGGTGGCTGCTAAAAATGGTCCCTGGAGACTGGTAACATGCCCATAGACATCATGGGTTAGCACAGTCCACGTTCTGCAGTAGTTCACAAAGTCAGAAGTTTGGCTAAACTTAAGTTGTCAGCAGGACTGCATTCCTTCTAGAGACTTTGGGGGCAGTTAAGGGAAGACTGGTTTCTTGCCTTTTCTAGCATCTAGAAGCATCCGAGTTCCTTGCCCTGTTCCCTTTTCATCCTCAAGCCAAGAGTGTGTCTTCAGGTCTTTCTCCAACTCTGGCCTTCTGCCTCTCTCTTCCAAACCTGAGGGCCCTGTGATTACATCAGGCCCACTGAGATAATCTAGGCTAATCTTCCAACGTAAAGGTCAGCTGATTCTGATCCTGCCTGCAACCTACAACCTTGATTCACCTTTGCCATGTGCCCCGATACAGGCATCTGACCCAGAGAGCAGGATGTGAGGCTCTGGGGGAGGGGCGGGGTGGGGCATTGTTTGGCCCACCAGCACAACCCAGTGATTCTCTGGAAGGATCCATGAGTTCTCAGTCTGCCAACTTCCGTTCTGGCAAAGCCGTAAGGTAAAAAAGAAGTGTTGCTTTTTCTTGAGCACCCAGTGCCATTGTGGAATGCTAAGGTCCCTCTGGCATGTGATCCTCCCAGAATATCATGGAGGGACGGCTGTTGCTGGGTCTGACTGGAAGCAAGAGGCTTCCCCAGGTTCGGGGTGTCAGAGCTCAAAGCCTTAGAGCTAGTGAAGAAACAAAGACTGAAGTTTAGGGTGTACTTATGGGACCTCCAATTGGATTAGCAGGATTCTGGGGACCAACGCTTGGGTCAAAGTAGCTGGGGTGCAGCCTTCCTTGCAGTTGGGTGCTTGTGGGTAATGCACCGCCTAGAGGAGCATGGTTTGCAGAGGTGTAACCCTACTCTGAAATCTGGGCGCAGCCTCTGACACTAGAAGAGAGTGCTTCAGGGACTGTGGTCCTTGACAGGTCATCCAGGGCCATCTGACACCTGAGTCACAGGGTGTGTGTGGGGTGGTGAGGAGTACCAGGTCTAAGTCCTCCTAACCTGTGCTGGGTGTGGTTCCGAAGCAAGGGAAAGTGGCCTCGGGTAGTCTGGTGGCTGTGGAACTGGTTTAGAAAGTTTAGAGATGAGACTACCTCCCAAATTCTACAGCCTTCATTCTCTTCGATTCAGGATACACACCCTGCATCGCTGTCCTCTGGTAGCCTCATTACATGATACAGTGCCAGGCTATTCTGTGGCACCTAGGTTCTGGGTCCCTAATAGTCAGATGCCTTGGCAGCCCCTAGGACCACTGTTCTGCGGTCTGCATCGGTATAGCCAGAACGCGGAACCAGTTTGTAGGTTGTCAGTGGAAGAGCTGAGGGACTTGATGTTTCCCTGTGAAGACTGTATCTTCAAGGCCTAAGAGGGAGGGCTTTGTAGCATCTGCCTCCTCCCCAGCCACCAGATTGTAATGGAGTGATTCTTTGTTCCTACAAAGCAGGCTCTCTCCTCGACCTCTGTCTCCGCCCTTTGGTAGGGGTCAGGGTGAGTCTTAAAGTTAGATATGCTCACACAGACCAGGCTGACAGGCCCTAGGGCTGCAGGGCCTCTCTTTCATACTTTTCGTGGCAGAAGACTCAAATGCACCAGGGCCATTCCTAGACATGGTTCCCAAGGGTCTCCAGAAATCTCGTATTTGGCCTCCAGGTGCCTGTAGGAGACACTGTAGTAGAAAATAGGAAAGAAACTCAGGTGTAGACTTAGGGAATGTTAGGTTTCAAATCTGGGGCAAATGGCTGAGGTGCTGTATTAAATGGTGTAGGCACCAGGTTCTCCAGATATCCCTTGGTCCCTGTTTCAGGGCCTCCTGGCTGGCGTACCCAGCCACCCACCCTGAACTCTCCAGCCTAAGGGCCTGGTCTGCTCTTGCTTACATAGCCAACCATTTTGGTTACCCACCCTCTTTGTACCTTTTGACCTCCAGGCTGCTGCACCTGGTTCTCCTCTCTTCCCCTCTCCCTCCCCCTGTCCCTTTCCCACAGCTCGTCGTCATGTCCTCTCTGGACTCCCCCATTATCCACAGTAAACCTTCTCCTACACCATCCCTAAAAGCAGCCATGGCCTTTCCATTTTATTGTTTTATTTTTCATTCAAGGAGGGGAACCCCTGCTGTACCCCTCAGGTGGCTGTTTTCTTTTGTACACGTTTGTGTGCACGTTGGTACACATTTTCCTGAGTGTGGGTGTGTGAGTACGTGAGTGTGGAGGTCAGTCAGAGGTTGCTCTCATGAATTTCCTCATTAGCTTCTCCCCAGTATTTGTCTTTTACAGAACCTAGTGTTCACCGATTGGCTGCCAAACCTCACGGATTCTCCTCTCTNNTGCCTTCCCAGTGATGGGACATGCACCACTATGACTGGCTTTTTACGTAGGTGCTGGGGATTGAACTCAGGTCCCTAGGCTTATGCAGCAGTCCCTCGCTCTACCAACAGCCCTCCCGGTAGCCCCACAGAGGAAGGCCGTTTTCTTAATAATTGCTATGAAATGCTCTCCTTACCATGTTCTCTTGTCCTGCCTGGGCAGGGCCTCCCTCCCCCAGGGTCCAGGAAGTCATTTCTCTGAGGTTAGAGTCCCAGCACGTGGACGGGATCGTACCACATGGTTTCCACGAAATGACATCTTGAGTCACACCGGTGTCTTGTTTGCACAGTGATAAGAATGTGATGTGGGACAGAGGGAGGAACTGACACTAACCAACCCTCAGCCAGCTACCTCACATCCTCACATCCTCCCAGCAGGGCAACTCCAGCCGGTCGGCCTTTGGAGGCCTTTCCAAAACTCTCAATCAGATTTGCCCTTGCCTTCCTTAAAGTCTCTCTGAGGCTTATGCTCACCTTCTGTGACTCAATCCTATACACACACACACACACACACACACACACACACACACACGTTCTCCTCTCTGACTGGCTGCCAACTCCCTCAGTGGGGAAATGGAGGGTTCTCACCTTTCACGTTCCACTCCACTCCCATCCCCCACTCATAAGCTTCCCAAGAAGAGCATTTGTCTAATTAGCACTGTGCATCTGATAAGCCACACCCCCAGGGGGCTCACACCCCCTCAGGGTGCTCACACCCGGTCATCTTGGCCTCCCTGGCACCGGGCACTGATTACGGAGTAGGTGCTCTGAGAATGTTTGCATAACTTCTCCAGAATAACCAGGGCGAGCGCCTGCGGCGGTGGATGGGTTTTGTGCTTTGATTCCTTGGCCCAGTAATAAACCTTAAGCCACTCCCTCAGGCTCTGTTCAGAGCTAATCTAGGGAGATAATCTCTAACTTGCTTCCACTGAAACAGAATTCCAGCTGGCTGGGCTTATAAATGATTTACGTCTTAGCTGGGTGGGGGTGTGTTCAGAAATGCAGAGTCCCAGGCCCCTTCCGCATACTCAGTGGGCTAGGTTCGTGTGTGACAGTTTGGGTAGCACTGTTTTGGTCACCTAAGCATCAGCTTTTAACTCTCGGATTGCCAGTTCAGGGAAACCTCGGGAGCATTGTCCGGGCACATTTGTTGTGTAGGGAACCTCTTCCCCGGGCTTTTTGCTTTTGCTGTCTGCTAGAGATGTTTTTGGGCATCACCACTCATAGCTCACCAGCAGCAGTGGACTGTCCAGCTGACCCTCAGCATTCAGGAGGCTGAGGTTGCCGCGCTGTGACATCAGACCCTCTATTTGTGTTTGCAGGCATGGGATCTCTTTACTGTGTGCACACCAGGCCTATGGAGCCACAGGTCTAGCGTTAGGAGGTGACTTTCCCATACGTGTGACTGACATCAAAGGCACTGGCGAGGGCCCTGCATAGGTGTCAGTGGCATGCAGTGCCCCCTCCCCCTCAATGCATGCATCGTTCTGTGTCTCCTTTTGTAACATCCTTCTTGGATGCAGGCTGGGTGCAGGTGAAGGACCACCTGCTCCTATTGGAGAGACTGTGTGCCCCTGCTCCTAAATGAACTATTCTCAGCACCCCAAGTCAACCACGTGGTCTCTGCTGCCCTCCCCTCTAAACTGTTTCCCTCTGAGCACTGGGGCTTGTGGGAGGCTGGCTTCTCTTAGCTGCACCTCTCTGGCTCACGTCTTTATCTGAGTTTTCCCCGTGATTGGTATGACACCTTTCTTCCTAGACACAGCGTCTGGGTGCAGGCTTTGCTCTTGACCCTCAATCTCAGACCCTGCCTCGCGATCACAAAGTGGGGTCACCCGAGTGGAGCAGAACCAGACAGACCTGTGCTCCTATGTGGAGCAGACGGAAGAGCATAACCACCAGCCCTCAGGCTAGTGGGATGATGACAGGAGTGCTTGCTGTGTGTCTGGCTTTTTACCACCAGAGAACGGTGACTGTTTTCATTTCTCCTAG
Seq C2 exon
AAAACGGGGAATTCCTTTCCCTGGATCTCGGAGGGTCCAAGTTTCGGGTCCTGAAGGTGCAAGTCTCGGAAGAGGGCAAGCAAAATGTCCAGATGGAGAGCCAGTTCTACCCAATGCCCAATGAAATCACCCGTGGGAATGGCACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049045:ENSRNOT00000074989:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(26.2=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]