HsaINT1015513 @ hg38
Intron Retention
Gene
ENSG00000156510 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr10:69227207-69232912:+
Coord C1 exon
chr10:69227207-69227369
Coord A exon
chr10:69227370-69232763
Coord C2 exon
chr10:69232764-69232912
Length
5394 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CTGAATTTGTTTCTTAATAGAAA
3' ss Score
7.12
Exon sequences
Seq C1 exon
GTGGACAGGTTCCTGTATCACATGCGGCTCTCCGATGACACCCTTTTGGACATCATGAGGCGGTTCCGGGCTGAGATGGAGAAGGGCCTGGCAAAGGACACCAACCCCACGGCTGCAGTGAAGATGTTGCCCACCTTCGTCAGGGCCATTCCCGATGGTTCCG
Seq A exon
GTGAGTGCAGTTGTCCGCTGCCAGGGTCCCTGGCTCCTCTTGGCTGATGGGTGTCTAAAGTACCTAAGGTTTGCCCCTGTACCTTGGCTTCTCTCTCTAGCCCTCTCTCTGCTGTCCCACCCTCCCTGCCCCTCTCTGCTTCAGTCCTGCTGAATCCCTCTTGCAGTTCTGCAGTTCTGCAGCCCCAGGCACCGTGGCTTCTCTGCCCATCGTGGCCTCACACATTTGCTCCCTCTCCTCCTGGAGCATCTCCATGTTCTTCCCTGGTGAGTATCAACGTGGCTTTTCCGTCTCAGCGTAGTGGTCCCTGCCTCCATCTAGGAAGTATCCCTGTGCTGGGCTGGGTGCTTGTCAGGGCACTTGTCACTTTGCTGTGTCCCCACTCTGAGTCTCCACCAAATTAACCACTCACTCCGTGGGTCCAAGGTCTTACCACAGTGTTCCCAGCACCTAGTGTAGCACTGGGAATGAGTAATGGGAGCAAGAATGATGTAGTGGAAATCACATTCAATGATAATTCAACAAACCTGGGTCTGAGGCCCAGCTCTGTCACTCTCAGTGACCTGAGGCAAGTGTTTAGCCTCAGTTTGCCCAGCTGTAGAATGAGAAATGGCCTATGTATCTGTTTCCTATGGCTGCTGTGATGTATTACTACAATCACAGTGGCTGAAAACAATCGAATATATTCTCTGACAGTTCTGGTGGACGGAAGTTTGCAGTGGGTCTCACTGGGCCAAAATTCAGGTGTCGGCAGGGCTGCGTTCCTTCTGGAAGCTTGAGGGGAGAATCTGTTTCCTTAACTTTTCCAGTTTCGAGAGGCCACCTGCATCCTTGAGGCATGCCCCTTTCTGTTCTCAAAGCCAGCAGTGTAGCCTCTTCAGGTCCCTCTCTGACCTGACCTTCTGCCTCCTTTCAACATTTAAAGATCCTGTGATCACGTTAGTCATGCTTAGATAATCCAGGATAATCTCCCAACTTCAAGGTCAGCTGATGAGCAATTTTGATCCCATCTGCAACCTTAATTCCCCTTTGCCTTGCACCCTCAGATATTCACAGGATCTGGGGATTAGGATGTGAGCATCTTTGTTGGGGGTGGGGGACATTATTTTGCCTACAATGGCCTAGAAATCTGTAGATAGGATCTATGAGGTCCCATCCAACTCTTCCATTCTCAGCCTCTGAATGAAGCTGTAAGAGGGAAAAGGGCTGCTACTGGCCTGGAGTGGTGGCTCACGCCTGTAATCCCAGAACTTTGGGAGGCCGAGGGGGGCAGATCACTTGAGGTCAGATGCTCGAGACCAGCCTGGCCAACATGGTGAAACTCCACCTCTACTAAAAATACAACAATTAGCCAGGTGTGATGGCATGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGCAAGGCAGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACGCCATCAAAAAAGAAAGAAAGAAAGGAAGAAGAAAGAAAGAAAGAAAGAGAGAGAAAGAAGAAAGAAAGGAAAGAAAGAAGAAAGAGAAAGAAAGAAAGAGAAAGAAGAAAGAAAGAAAGCAAAGAAAAAGAAAGAAAGAAAGAGAGAAAGCTGCCATTTACTGAGCAACCACTGTGGTCATGGGGTGCTGGGGACTCGCTGAGCCACATATTTCCTGTGACAACCCTGTGGTGTGGCTGTTCAGACAGAACCACCAAGGACCAAGGGGTTTCTCCCATGTCAGGGTCCCAGTGCCCAAACCGAGCTCGTGAAAGAGCACTGGGGCTCTCGCAGGAGCAGGGTCTGAGGTTTGGGAGCTCTCAGGGGGCTTTGATGGGATCAGTCGTGTTCTGGACCTCTCTGGAGCAATGCCTGGATCAAGGTAGCTTGGCTCTGCTGGTTGAGAGGCCCTGGGACACTGCACTGGGAAAGGCCCTGTGCCCTCACTTGTGGGTAGGTGCTTGGGATGGACAGTGCCCTGTCCTGGAAGGACGTTGAGCTTCGGAGAGAGACAGCCCTACTTTGAAATCTTGGCTCTGTCCTTGCCACAGCTTGACGAGAGTACTGGGACGTGTCCTTGACAGGGCATCTGGGGCCCCTGGGAGGAAGCAGCTGAGTCATGTGGGGAGCACCAGGGCTAAGTCCGCCTGGCTTCCTGGACTGCAGCCCCTCCTCCTGATACAGACAAGGTGTGTCCCCAGAAGCAAGGGAAGGTGGCCTTTGATGGTCTGGAGGCTCTGGGACAGGCGGTGTCCTCCTGGCCCTGGCTGCTTCTGAAGGTTCAGAAGTGAAACTAACTAAGTCATAGAAACTCTCTCCTCCTTAGCCGGGAAGACGCCCAGCTCCCCATCCCCGTCTCCGCAGAGCCTCTCACCACACAAAGCATCTCACCAGTGATTCTGTTGTGCCGAGGTCCCTGGGCCCAGAGTCCCTAATAAGCCAGGTGTTCTTGGTAAATCCCGGCACCATACATGATTGTCAGGATTTAATGAGATCATGTGGATGGCGTGCTTTAACATCTCTAAAATCTTGTCCCAAGTCCTCCTAGCTCTTGTGAGCTGGTGGTATAATTTCATGATTACCGACAAAAAACAAGCAAAACTCTCCTAATTCCTTATGGTGTCCGTTTCAGAAATGTATGCAGCTTCCAGAGAAGTCCTGAGTTTGCCTACTCCCATCAGGACCTATCTGCGAGGGAGTCACCTGTTTGAGCCTTAGTTACCACCCAGCCTTTTGGTCAGGGGGCTGCAGTGGTCTGTTCTGACAGGATCAAGTGCCTTAAAAGTGCTGTGTTAATACTGGAGCCTTCTCTGCCAGTCATGGAAGGGGCATGGGAAGCATGAGGGTGACTGTGATTCTTTGGCTTGACCCCTGCTGGCTCTGTTCCAGGCCTTAGCCTCCAGTCAGCCTCCAAGGCCAAATAGGCCTTGGGGGTGAGCCCGGGAGCCCTGAGGTCGTCAGCCTGGAGCCTCGAGTGTTTCCTAATACACACTTTCCCAGCCCCTCCCCCTGGGGACTCTGAATCTCCAGGAATCTCCGCATTCAGCCACTGTGCACCTTTGGGAGACTCTGCACTGGGTAAAAGGAGGGAGTGAAGGCACCAGCACCAGCAGTGACTTACGAGAAGGGAACCATTGGGTCCAAGGCAGTTCATGGAGGGTCCTCTGGAGCAGGCAGATTGGCCAAAGCAATTTACCCCGCTTAGGACACTGTTTTCTCTTTTCTTTCTTTTTAGAAACAAGGTCTCCCTCCGTTGCCCAACCTGCAGTGCAATGGAGCCATCATAGATCACTGCAGCCTTGACCTTCTAGGCTCAAGTGATCCTCCTGCTTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCATGCCACTACGCCCAACTGACTTTTTTGTCTTTTGTTTTGTAGAGACAGGGTTTTACCATATTGACCAGGCTGGTGTTGAACTCTTGGCAAGGGATTAATTCTCCTGCCTGGGCCTCCCAAAGTGCTGGGACCACAGGTGTGAGCCACCGTGCCTGGCCGGGGCTGTTTTCTTGATGTCTGTGAAGACTCTGAGGCCCCACAGACTGCTGTTGCCTGGGCAAGTCCTCCCTCTCCCAGGGTCCACTGGTTCCTTTTTTCTGGGGTCAGAGACAGAAGGGATCACACCATGTGGCATCCATGAAATGGCACCTCGAGCCACTGGTGGAGTGAGGTGTTTGATAGTGATTGCGATGCGGGCCGGGAGTGGGATGCCTCCACACCGACACTGGCCAGGTCTCAGCACATCCCCTCCCGTCCGATGGCAGTGCAGCAGCCTCTTCTTTTGTTAAACCCTCAGTCTATTCTGGTTGGTGTCAGAGGCATTTGTCCCCAGAATCTCAGATCTTGGCACTCCCTAGCTTAAAATCTTTCTGCAGCTCCCTCTCACCTTCCAGATAAAGCCCAAGCTCCTTGGGGTGGATAGCTTTTCCAAATCCTTCCAAATTTAACCTGAGAGCCACCTTCCAACCTCATTTCTGTGACAGCTGCCCTCCTTTGGCAAAAGCACACTCACTCTTAGCGGATGCTTTCTCATTCCTTTGCCCGTGGTTCCTCTCCCTGGGACCCCCGCTCCCGGCAGCCTGGCAGCCTGACTCCTGCTCACCCTTCAACACTCAGCTCTGTGTCCCCTCCCTGCAAAGCCAGCTGCCTTTGTCTCCCAGCTTTGACCTGGATATCTCTCCCTGTGCCTCTCACAATCTGAGCACTGGTCCTACTATATGGAAATAGCTGATTTATGCGCCTGTATTTCGGATCAATTTCCCAGGGAGCACACCGTCTTTCATCTGCGCATCCCTAGCACCTAACACATGTTACTCAGCACAGAGTAGATGCTCAGTAAATGTGTGGACATAGATTGTGGGATCTACCCTACCTCCTACACAGCAAGACAGCATCTGGGAGAACCCTCTTACTTGGTGCATAATATATACTAATAAAAGTTGCATAGGATTAACTCCCTGAATTCCCTCACCAAATAATAAATGACTCCATCAGCTCCTTTGTGGCTGATCTGTGAAGGTAAGAATTTCCGGATGTCTACACAAAAACAAAAAATCGAGCTGGCTGCACCTTTGCTACTCTAACTATGGTCTACAGACCAGCAACAGCAGCAACATCACCAAGTTGGCCAGGCTGTTCTTGAACTGCTGACCTCAGGTGATCTGCCCGTCTCGGCCTCCCAAAATGCTGGGATTACAGGCATGAGCCACTGTGCCCAGCCCCCACCTTTCAATTAATGGCATCTGTCTTGGGCTGGGCTGGGTTGTGTTCCAATGTCTCCTTTTGGAGTGGCTCTGGCCTAAAAAAATCAGCATCCTTGGCACCTCAAGGGCCATTGTTTAGTCCCTGTCTCCTCTCCCCTCCAGGAGTGTTTTCCCTCTGCCCATAGGATCATCGGCTGCAGGAGGCTGGCTGCTCCTCGCCGCACATCCTGTCTTCCCCCTCATACCTTTATCCGAGTTTCCCCAGGCTGGGAGCACCAGCTCTCTCTTCCCAGTGATGGCATCCCAGGATGGGCTCCACCGTCGAGGCCACCTCTCATACCACCGCAAGGGCTGTGCTCACATTTGCCCTCTCCAGTTGACATGCACATTCCTACAGCATGAGCCAGTGGGTTGGGCTCAGGCTGCAGAGTCAGGCTGACTTAGTTCACATCTCAGCTCTGCGCCTTACCTCGAGGGCTCTGAGAAATGGCCAGAGTCCTCAGCCTTGGCAAATGAGCATAATGATACCTAGTGGCTGTGATTTGAAGACGTTGATTATATGTCCAACCTCTAATGCAGAGCTTGCCATATCTGTAGTAGACCCTCAATAAATGGAAACTGAATTTGTTTCTTAATAG
Seq C2 exon
AAAATGGGGAGTTCCTTTCCCTGGATCTCGGAGGGTCCAAGTTCCGAGTGCTGAAGGTGCAAGTCGCTGAAGAGGGGAAGCGACACGTGCAGATGGAGAGTCAGTTCTACCCAACGCCCAATGAAATCATCCGCGGGAACGGCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156510:ENST00000354624:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.060
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(26.2=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains