MmuINT0078026 @ mm9
Intron Retention
Gene
ENSMUSG00000020080 | Hkdc1
Description
hexokinase domain containing 1 [Source:MGI Symbol;Acc:MGI:2384910]
Coordinates
chr10:61874454-61880685:-
Coord C1 exon
chr10:61880523-61880685
Coord A exon
chr10:61874603-61880522
Coord C2 exon
chr10:61874454-61874602
Length
5920 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ACTATTTTCATTTCTCATAGAAA
3' ss Score
7.52
Exon sequences
Seq C1 exon
GTGGACAGGTTCCTGTATCACATGCGGCTCTCGGATGAGACCCTGGTGGACATCATGGCCCGCTTCCAGGCCGAGATGGAGAAAGGCTTGGGGAAGGACACCAACCCCACTGCCTCTGTGAAGATGCTGCCCACATTCGTCAGGGCCATTCCAGATGGCTCAG
Seq A exon
GTAAGCGGGGCTCAGGCTGACAGAGACGCCCTTCCCTCCATTCCCATACCAGCCCCTTAGCTGATGAGTCACCATCGCTTGCCTCTGTCTTTTTCTAACCTCTCACCTCCCTCTGCCCCAGTCCCACTAACTGAACACTTTTGGGGTCCACATCAGAGACCCTCAGATTTTCTTCTACCCACCACATCCTCATTCCATTTGCAGAGTCCTCTCCCCCCTCCCATTCTTGCACCTTGATTTTTCCAGGTGCAGCCCAGAGATCACCCACTGCCTCTCTCTAGGAAATGTCCCCATACTAGGATAGGGGCTTGTTAGGACACTTGTCACAGTTGTGGGTGACAGTCTCCAGAAGCCAGGGCTTGGTTACCACATTGTTCTGAGCACTTAGCAAATACTAGCCCCTGACACAGGTGTTGAATGAATGGTACGTGGCCTTTAGACTCCAGGCTAGAAACAGTAAGTACTGAGAGGACCTGTGTGGGGAAGTACAATGGCCTAAGTGACCACCCAAGGAATCTGGGCTTCAGGTCCAGCTCCATCACACCTTAGAGACTCCAGGCAGCCATTGGTCTTACTTCTTCATCTGTCAGATGGGGGATGTGGTCCATCCATATGCTGGGCTGGGTATCAAACCCAGGGCCTGGGCCATGCTCTTGGTCATGCTGGATAAGTCCCTATAGCTGAGCCACATTCTCAGCTCCTATGTATTGGGTTACTGTTGCTTTTCTGCTCTTGGGATGGGAGGCAGGAACTCTGAAGGAGTCCACTCAGGCCCAGATGATGGCCCCAACAAGTCTCTGTAGGACCTGGGTTCCATTTTTGCCTGAGCATAAGATCTGCCCATGTGTGGTGGCTCCTACACGTGGTCCCTGGAGACTCTGGTAACATTCCCATAAATACCATGGGTTAACACAGCACACATTCTGCTGTAGTTCACAAAGTCAGAAGTTTGAAATGGGTCTCGCTAGGCTAAACTTAAATTGTCAGCAGGGCTGTATCCCTTCTGGAAACTCTGGAAGCGGTTAAGGGAAGATTGCTTTCTTGCCTTTTCCAGCATCTAGAAGCACCCACGTTCCTTGCCCTGTGCCCTTTTCATCCCCAAGCCAACGGTGTGTCTTCAGAGCTTTCTCCAACTCTGGCCCTCTGCCTCTCTTTTCCAAATCTAAAGGCCCTGTGATAATAACATCAGGCCCACTGAGATAATCTGGGCTAATCTCCCAACGTAAAGGTCAGCTGATTCTGAGTCTGCCTGCGACCTATAACCTTGATTCACCTTTGCCATGTGTCCCAATATAGGCGTATGACCCAGAGATCAGGATGTGAGCCTCTGGGGGAGGGGAGGGGCATTAAGCTTCCATCTAGTATTGCGCCAACTTCAGTTCTGCTAAAGCCATAAGATAAAAAAGAAGAGCTGTTTTGTTTTGTTTTTTCCTTGAGCACACAGTGCCATTGTGGAATGCTAAGGTCTCTCTGGCGTGTGATCCTCCCAGAACATCATGGGGTGACAGCTGTTGCTGTGTCTGACTGTGAAGCAAGAGGTTTCTCCAGTTTCGGGGTGTCAATGCTCAAAGCCTTAGAGCTATTGAAGGAACAAAGACTGAAGCTTAGGGGACCTCCAATTGGATTAACAGGATTCTGGGGACCAATGCTTGGGTCAAAGCAGCAGGGGGAGGCCTGGCATCCTTCCTTGCAGGTGGGTGCTTGTGGGTAATGTATTACCTAGAGGAACATGTGATTTGAAGAGGTGTGACCCTACGGTGAAATCTGGGCACTGCCTCTGACACCAGAAGAGGGTGCTTCGGGGGACTGTGGTCCTTGACAGGTCATCCAGGGCCATCTGACACCTGAGTCATGGGGCGTGTGTGGGGTGGTGAGGAACACCAGGTCTAAGTCCTCCTAACCCGTGCTAGGTGTGGCTCTGAAGCCAGGGAAAGTGACCTTGGGTAGTCTGGTGACTGTGGGGCTGCTTCAGAAAGTTTAGAGATGAGACTCCCTCCCAAATTCTACAGCTTCGTTCTCTTGCATCCAGGACACACACCCGGCATTGTTGACCTCTGATAACCTCTCATTACCTGATACAGTGCCATGCTATTCTTTAGCCACGGGGCCCAGGGTCTCTAATAGATGCCCTCGGCAACCCCTATACCACTTTTCTGCAGTCTGCATCAGTAGAGTATAGTCAGAACATGGCACCCATTTGTAGGTTGTCAGTGGAAGAGGCCAAGGGATGTGCTGTCTCCCCATGAAGACTGGGTCTTCAAGTTTGCCGAATCGAACAACAGACAGAGCCACAGGAGAAAGCGTGCAGCCTCATCAATGTGCCCATGAGCACAGGGGCCATATGCAACATGGGATTCTGGGCCCCTTAGTAAGGAAGCTAACACAGGCCTTTCTTGTCAGGACCAAAGGCCTAAAAGTGAGGGCTTTGTAGCTAGCGTCTGCCTCCTTCTCAGCCACCAGAAAGTACAAGAGTGACACCCATCTCAGATTGTGGTTGTAATGGTATGATTCTTTGTTCTTATATAGCAGGCTCTCTCCCTGACCTCCGTCTCCACCCCTTGGTGGGGGTCAGGGTGAGTCTTAAAGCCCACTGAGCTCACAAAGACCAGGTTGACAGGCCCTAGGGCTACAGAACCTGGGTTTCATCCTTGCTGTGGCAGAAGATGCAAACGCACCAGGGCAGTTCCTAGACATGGTTTCCATGTCCTCCCCTGGGGAATGTGGGTCTCCAGAAATCCCTGTATTTGGCCTCCAGACTCCCGTAGGAGACACTGTACTAGGAAATAGGAAGGGAGTTGAGGTACAGGCCCCAGCAGTGGCTTAGGGAATGTTAGGGTTCAAACCTGGGACGAATGGCTGAGGTGCCATATTAAATGGGCTAGCCACCAGGCTCTCCAGATATTCCTTGGTCCCTACCTGTTTCAGGGCCCTCCTGGCTGGCATACCCAGCCCCCTCTCCTGAACTCTCCAGCCCAGGGGCCTGGGCAGCTCTTTCCTATAGAATCTAACCGTTTTGGTTACCTACCCTCTTTGTGCCTTTGGACCTCCAGGCTGCTGCGTCTGGTTCGCCTCTCTTCTCCTCTCCCTCCCCTGTCCCTCTCCCACACAGCCCGGCTCAGGGTCATGGCCACTCTGGGCTCTCCCCTTATCTACAATAAACCTTCTCCCCTGCCATCCCTAAGAGGAGCCATGCATGGTCTTTTCTTTGCCTTTTTTATTTTATTTTTTCATTCAGGGAATGGAACCCTTGCTCCCCACCTCCGGAGGTTTTTTTTTTCTTTTGTGCATGTTTGTGTGCGTGTTGGTGCACATGTGTGGGAGTGTGGGAGTGTGTGTGAGTGTGGAGGTCAGAGGTTGCCATCAGAGACTTCCTCAATAGCTTCCCCCTGTATTTGTCTCTTCCCTAGTGTTCACTGATTGGCTAGAATGGATGTCTGACAAACCTCAGGGGTCCTCCTCTCATGCACCACAGTGACTGGCTTTTTACATAGGTGCTGGGGATTGAACTCAGGTCCCTAGGCTTGTGCAGCAGTCCCTCACTTTACCAACAGCCCTTTCGGTAGCCCCTGAAGAGGAAGGCCTTTTTATTTTTCCAAATGAGTCTTTTTTTTTTTAAGATTTATTTATCATATGTAAGTACACTGTAGCCATCCTCAGACACACCAGAAGAGGGAATCAGATCTCATTACAGATGGTTGTAAGCCACCATGTGATTGCTGAGATTTGAACTCAGGACCTGCGGAAGAGCAGTCAGTGCTCTTACCTGCTGAGCCATCTCGGCAGCCTCTGCCCCCCCCTCCATTTTCTTAATAATTGTTGTGAAAGATTCTCCTTACCCTGTTCTCTTGTCCTACCTGGGCAGGGCCTTCCCCCCACCCCCACCCCCAGGGTCCAGGAAGTTATTTCTCCAAGATTAGAGTCATACCACGTGAGAGGGATCAGACCACATGGTTTCCATGAAATGACATCTTGAGTCACACTGGCAAGGGAGGTGTTTGCACAGTGATAAGGATGTGACGCTAGACAGAGGGAGGAACTGACTCTAACCAGGTCTCAGTTTGCCACCTAGAATCCCGCAGAGGGGGCAACTCCCGCTGGCTGGAGACCTTTTTCAAAACTCTCCATCAGATTTGCCCTTGCCTTCCTTAAGCCCTATGGCTCAGCCTCACCTTCTGTGACTCAATCCCATCCCCCACTGGCAAACACTCTCCTCTCCACCTGGCTTCTGACTCCCTCTGTGGGGAACTGGAGAGCTCTGGCCTATCATGTGCGACCCCACTCCCATCCCCCACACGACCCCACAAGCTTCCCAAGCACAGCATTTGTCTGATGTAGCACCATGCTTCTGATAAGCTTTTTCAGGGGTTCCCACCTCCTCAGGGAGCTCACACCTCCTCAGGGGGCTCACACCCTGGCATTTGGGCACTGATTATGGAGTAAGGTGCTCCTGTGAATGTTTGCAAGACTTCTCAGAAAAACCAGGGTGAGCGCTTGTCGCTGTGCACGGGTGTGATAAGTGCATAGGATTTTGTGCCTGGATTCCTTGGCCCAGTCATAAACCTTAAGCCACTCCCTCGGGCTCAGTTCAGTGCTAATCTAGGGAGATAATCTCTACTTGCTTCCACTGAAACAAAATTCTGGCTGGGTCTATAAATGATTGACACCTTAGCTGGGGGGGGGGGGGGGATGGCGTGTCCAGGAATGCAGAGTTCCAGGCCTTTCCACTGACTCAGCTGCCAGGTTCTCAGAGAGGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACAGTTTGCACAGCACTGTTCTGGCCAGCTAAGCATCAGCTTTTAACTCTTGGATTGCCAGAACAGAGAAACTCCGGAGCATAGCCCGGGTGTGTTTGTTGTGTAAAGACTGAGATGGAAGCACACAGATCTCATGGAAATCCTACAGCAGGGACCTCTGTGTGCTCAGCTTTGGGGGAACTGGGCCTGGGAACCTCCTCCCCGTGTCCTCCGCGTTTGCTGTCTGCTAGAGATGTTTCTTGGGCATCACCTCTCGTGGCTCACTAACAGCAATAGACTGTCCAGCTGCCCCTCAATGTACAGGAGACTGAGGTTGCCATGGTGTGACATCAGACCCTGCTACTGGGGTTTGCAGGCATGGGATTTCTCATGCCTGGCCTATGAGACCACCCTGCAGGCACAGATAGTTCTTTATAAACACGTCTAGTGTTAGGAGGTGAACTTCCCATACATGTGACAGACACCAAAGGCACTGGTGAGGGTCCTGCATAGGTGTCATGGCGTGTGGTGCCTCCCCCACACATGCATCATTCTGTGTCTCTTTTTGTAGCATCCTTCTTGGGCTTTTGGATGCAGGACCATCTGCTCCTGGTGGAGAGACTGTGCGCCCTTACCCCTAAATTAAGCAACCATGTGGTCCCTGCTGCCCACTGGGGCTTGTGGGAGGCTGGCTTCTCTTCGCTGCGCCTCTCTCTCCCCCCCCCTCTCTCTCATGCCCTTATGTGAGTTTTCCCAGTGGTTGGTGCAACAGCTTTCTTCCTAGACAGCATCTGGGTATAGTCTCTGCTCTTAAGGCTCATTCTCAGAGCCCAGCCCCACCCCGCCCCGTCCTGCTCACAAAATGGGGTCACATGTGCCTTTTCCCAATGAGCTTGCTCATTCTCTCCAGCATGACCGAGTGGAGCAGAATCAGGCAGACTTGGGCTCACATCCCAGCTCTGCCAGCTCCTGTGTAGAGCAGACTGAAGACCATATCCCCAACCCTCAGGCTAGTGGGCTGGTGACACTAATCCGCAGGGGGTTGGGACCTTGGACAGCGCTTGCTGTATGTCAGGCTTTTTACCATACCTAGGAGAATCTCCACAGAATGGTGACTATTTTCATTTCTCATAG
Seq C2 exon
AAAACGGGGAATTCCTTTCCCTGGATCTCGGAGGATCCAAGTTTCGGGTCTTGAAGGTGCAAGTCTCCCAAGAGGGCCAGCAAAATGTTCAGATGGAGAGCCAGTTCTACCCAATGCCCAATGAAATCACCCGTGGGAATGGCACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020080-Hkdc1:NM_145419:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.220
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(26.2=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: