GgaINT0044680 @ galGal3
Intron Retention
Gene
ENSGALG00000021039 | E1BRU7_CHICK
Description
NA
Coordinates
chr6:11956568-11957494:+
Coord C1 exon
chr6:11956568-11956667
Coord A exon
chr6:11956668-11957310
Coord C2 exon
chr6:11957311-11957494
Length
643 bp
Sequences
Splice sites
5' ss Seq
TTGGTAACT
5' ss Score
4.27
3' ss Seq
ACTGGCTCTAACACAAACAGGGA
3' ss Score
5.1
Exon sequences
Seq C1 exon
GACATAGACGTCGATGTTTTGGCGATGGTCAATGACACTGTAGGCACCATGATGACCTGTGGATACGATGACCCGCGCTGTGAAATTGGACTCATAATTG
Seq A exon
GTAACTTTTTCTGCTCACTATGCATCGTCTTTTTCCTTGTTTGATTAATCCTAATGAATCTCGAGTAGGAGGGAGTGTCCCACTACCAGAAGGAGCAGGAAGGAAGCGGAAAAAAAACAGTGGCTGATTTTCAAGCATGGCTGCCTTCTATAAAGCAGCTATTTTTATGCTGATCACACTGCCATCAAACACCACAGTCCCCATTTTGTCTGGGTTCAGTTGTGACCAGCATACTAAACTTTTCTGCTGACTGCGTAGAAAATTACTGTCTGTCTGTCCAGAGAAAGCTGAATTCATCTCATGTCTGGTAGTTAGGATCAGCTGGGCTTTCCATAACCCTTCCACTTTACACACAATGGTGACTTTTTAAAGGCACATGGAAGTACATTTGAGATAGGGGAAAAAATGGTTTTAAACAAGTCAAACCATGGATGAATTTCTCGTACTTTCACTCATTGATAAATGATTACTTAACAAGTACAGGTGGCCTGATACTAGCATCTTTACCACTGGGTTGTGTGTTTATACTTTCTTTCAAAGGTAATATATTGACTTGTTTGTAAACGTGGACTTAAAACTAAAAGGAAGCCTGAGGCTAATGGCTAAATGGCTAATTTAACCACACTGGCTCTAACACAAACAG
Seq C2 exon
GGACTGGCACCAACGCGTGCTACATGGAGGAGATGAGGCACATCAATTTGGTGGAAGGTGACGAAGGGAGAATGTGCATTAACACAGAGTGGGGTGCCTTTGGAGATGATGGTGCTTTGGATGACCTCCGCACAGAGTTTGATCGGGAACTCGATCTGGGGTCTCTCAATCCCGGAAAACAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021039:ENSGALT00000006717:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAGACGTCGATGTTTTGGCG
R:
GTTTTCCGGGATTGAGAGACCC
Band lengths:
278-921
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]