HsaINT0076419 @ hg38
Intron Retention
Gene
ENSG00000156510 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr10:69240652-69243365:+
Coord C1 exon
chr10:69240652-69240751
Coord A exon
chr10:69240752-69243181
Coord C2 exon
chr10:69243182-69243365
Length
2430 bp
Sequences
Splice sites
5' ss Seq
TCGGTAACT
5' ss Score
6.25
3' ss Seq
CTCTCTGATCCCTGGTTCAGGAA
3' ss Score
9.1
Exon sequences
Seq C1 exon
GACATGGACGTGGACATCCTGGCCCTGGTCAATGACACCGTGGGGACCATGATGACCTGTGCCTATGACGACCCCTACTGCGAAGTTGGTGTCATCATCG
Seq A exon
GTAACTCAATTGGACTGGTTTTTTGAGGGTAGGGGAGAAGGGACTGTTTGGGAGTTTCATTTCAGCGAGCTCTGAGTGAATTCGGCGGGAAGGGCACTGCACTATTTAGGAGAAGCAACATAGGGACATGAAAAATTCATTCATTCATCCATTCGACAAGTGTTTACTGAGCACCCATTGTGTGCCGGCCCCTGGGCTTGGCACTGGGTTTGGAGTGGGGAGTTCCTGTGCTCCTGGAACTTTCAGTGGGGAGGTGGGTGAGAGGCCCAGAAGGCCTAGGCTATTAAGATAATTTCAGGTGGTGGTTAGCGTGATAAAAAAACAAAAAACAAAAAACAAAGAGAGTGATGTGACTGTGAGTGGGATGAGGCGTCAGGGAAGCCTCTCTGAGGGGTGGCATTTGAGCCGGGACCTCAGTGATGCAAACCAGGGAGCAAGGTGGAGGCCCGAGGGTAGGGAGTCCCTGCCAAAGGAAAGAGGACACCTACAGGCTTGGAGATGGGAAGGGGTCCAGGGAGGGGGCACTGGGGGAACCCTATAGCCGAGTGGTGTCCGGATGAGGTGAGTGAAGGCTGAGAGTCGGAGGCCATTCAAGTGAGAGGCAGAGGACAGACTGGGCAGATTGCACAGGATGTGCACACAGTCACTGTAAGGTCACCGGCTTATCCCCTGAGGGAGACTGGAAGGCACTGGGGGACTCTGGGTGGGGGATGGATAAATGGATGCGCATTTTATTTTATTTTTTTATTTGAGACGGAGTCTTGCTCTGTCGTCCAGGCTGGAGTGCAGTGGCACAGTCTTGGCTTACTGCAACCTCTGCCTCCCAGGCTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCACCACGGCTGGCCAATTTTTTGTATTTTTAGTACAGATGGGGTTTCACAGTGTTTGCCAGGCTGCTCTCAAGCTCCTGACCTCAAGTGATTCACCCGCCTTGGTCTCCCAAAGTGCTGGGATTACAGCCATGAGCCACCACGCCCGGCCGGATGTGCATTTTTTAAAAGCCCATTTTGGCTGCTGTGTGGATAATAGATTACTGGGGACAAGAGTGGAAGCAGGGTGACCATCCAAGAGACCACTGGACTGTCAGGCAAGGTGCACTGCAGCTGTGGACCAGAGAGGTCGTGGTGCAGTGGGGGTTTCCAGTGGGTGGTCTCCACACCAGAGCGAGGGGGTCAGCTGGAGGAATGTGTGGGAAGGCAGTTTGGGGTACAGTAAAGCTGAATGGCTCTGACTTATAGGTTGTTCTTGAATATCCCCTTCTCCTTTTCCCATTCCTTTACCACTCCTGGGGAAAGTTCTTCTGAATTGCTTTTTCTTAATGTCCCTCAAGACCCTCCTCAGCCTGGCTTTCCCAAAGGGCAGGTTTTTAAACCTGAGGGGCTCCCTCCACCCTTCTGTTTCCAGGAGCCTCAGAATGGTTCAGGCCCTTGCCAGTCATGGCACCCGCCTGTCACTGTGGCTGCGTCTGGTAACCACAGATTGGGGGGGCCACGCCTAAACAGTGTCCGTGCATTTCTGAGAAAAGCTTTTTCCAAATATTACATTCTGCTTTTCTACATTTCTCATTTTCCATGTTGGCATTTAAAATACTCATACCAGAGTATCAGCCAAGGGAAGATACTGAAGAAAAAAAAAAAAAAAAAAAAACCCGAAAATTCAAACAGCTTTATTGAGGCATAAAAGTCCTCCGATTTTAGGTATACGATTCAATGATTTGTAGTAAACGTATAGTTTTGTAACCATCACCACAATCCGATTTTAGAACATTTCTGTCCTCCCAAAAGAGTCCAAAAAGATGGTGCCCACTTGCAGTCATTCCCCAGTGCTCAAGTGTTTGAGGCATTTCCTTGGAGCGATTTTGTGTTTGCATAACGGAATGTTGCTTTCTTAGGTGGTAGCTAATCACAGTCTAAGATAAGGATGCAGCTTATGCTAGAAACAATTTGTGGCAGGCCATAAGTAAAGAATATTTTTAGTATCAAATAGAGAGGAAGCTAAGTAGCTTAAGGAAAGAATTTTCAAAATTACCCTGGGTTGGTGATTTTTTGAAAAAAATATTTACAAGATTATCTTCATTTGTCCTCTTGTAAGAGCGCTTCGTCAGCTTTCATCCATATTCATCAGCGGACTTCTTCACAATTGACTCCATTCAGAACAGCAAACCCTGAGCACCCTGAGAAGTGCAGACTTGACATGTCAGCTGTTTTCCCCATGTGCTTGGGGCTTGCCCAAGCTGCTTCCCTCAGCGAGAGCCAGCCCCCAGGGAATGAAAAGCACTTTGTGGTACATTGAGGAGGACTCCCCAGCAGTCAAGAGTTCTCTGTCTGTGCCCAGCTGGGAGTCCTCTCTCTGCATATTCTCTCTGATCCCTGGTTCAG
Seq C2 exon
GAACTGGCACCAATGCGTGTTACATGGAGGACATGAGCAACATTGACCTGGTGGAGGGCGACGAGGGCAGGATGTGCATCAACACAGAGTGGGGGGCCTTCGGGGACGACGGGGCCCTGGAGGACATTCGCACTGAGTTCGACAGGGAGCTGGACCTCGGCTCTCTCAACCCAGGAAAGCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156510:ENST00000354624:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development