GgaINT0044690 @ galGal3
Intron Retention
Gene
ENSGALG00000021039 | E1BRU7_CHICK
Description
NA
Coordinates
chr6:11963107-11964152:+
Coord C1 exon
chr6:11963107-11963262
Coord A exon
chr6:11963263-11963918
Coord C2 exon
chr6:11963919-11964152
Length
656 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
CTGTGTTTCCCTTTACGCAGCGA
3' ss Score
8.17
Exon sequences
Seq C1 exon
ATACGAAAAAATGACCAGTGGAATGTATCTAGGTGAAATAGTGAGGCAAATTTTGATTGATTTGACCAAACAAGGACTGCTGTTCAGAGGACAGATTTCAGAATCACTCAGGAAAAGAGGCATATTTGAAACAAAATTCCTATCTCAGATTGAGAG
Seq A exon
GTAAAGTTCATTAATTTACTTGCTATGATTCCTCAAGGTCTTCTAGGACCTGTAGAAAATAATCTGAAAGTGTGGAGACCTTTCCTTCAAGAAATCAATGATAGTTCCCTCCTTTGTCTCCAAACCCTCAGCCTTCACCCAAATGATGAATCATCATCCACACAGCTATGTTGTCTTCAATGTCTTAGCCACTGAACACAACTGCACTTGGAATCTTTCTTTGTAGAACTTCAAATAATACTTAAAAATAGTTAACTACAAGTCAGTGTTATGTAAATGCCCCATGAATATGTGCTTACCTACTTATCTGTGCATGACTACAACAGTCCTCAGGGCTGTTTGAAACCCTTGCTGTCTCAGCCTTTAGGTCCAAAAACAACATGGTCAAGTGACTGATCTGACACAGCTTCCTCATGGCATTGGGAGCTAGGTGAATAACTGGAAATACAGTCTAACACAACAAAGAACGGGCCATGAGCAAGTTTGGGATCTGGACTGAAAACTGCTTTAAAACAATTAGAGGATGTGAGAACTGGAAGCAGTGGTCCCATTTCCTTTGAATAATGACAGAATCTCATCTGGAAGGCTTTAGAAGATTTGTACCTGCCAGAGCTTCCCATAATACTCTGACGCTGCCTGTGTTTCCCTTTACGCAG
Seq C2 exon
CGACCGGCTCGCCCTCCTCCAAGTCCGACGGATTCTGCAGCAGCTTGGCCTCGACAGCACGTGTGATGACAGCATCATTGTGAAAGAGGTGTGTGGGGCTGTTTCCAGGAGAGCTGCCCAGCTCTGTGGGGCAGGACTGGCAGCCATTGTAGAGAAGAAGAGAGAAAACCGAGGTGCGGAGCACTTGCAAATTACTGTTGGAGTAGATGGGACTTTGTACAAGCTTCATCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021039:ENSGALT00000006717:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAGTGGAATGTATCTAGGTGA
R:
CAGTAATTTGCAAGTGCTCCGC
Band lengths:
342-998
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]