BtaINT0072352 @ bosTau6
Intron Retention
Gene
ENSBTAG00000033398 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr28:25786360-25787378:+
Coord C1 exon
chr28:25786360-25786515
Coord A exon
chr28:25786516-25787144
Coord C2 exon
chr28:25787145-25787378
Length
629 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACT
5' ss Score
6.64
3' ss Seq
CCTGCTCTGCTTGCTGGCAGCGA
3' ss Score
7.19
Exon sequences
Seq C1 exon
GTACGAGAAAATGACCAGTGGGATGTACCTGGGGGAAATCGTGCGGCAGATTCTGATCGACTTGACCAAGCAGGGTCTCCTCTTCCGCGGCCAGATTTCAGAACGTCTCCGGACCAGGGGCATCTTTGAAACCAAGTTCTTGTCTCAGATTGAAAG
Seq A exon
GTGACTCATGATCAGTTTCACCTGCTGGACATAAAAGGCCCTATATTGGGACATGATGCTGTCTCACCAGGCTCCAGCAGATTTGAAATTTAAAAATAGAGAGTAAGAGCCCGTCCTGGGGCTACTCCCTCTCTCCAGCTACATCAGTACCACAGCACCCAGCTGAGGAGCCAGAAGCCTATCTGGGCCCCTAGATTCCTAAATGGTTACAGAAGAGTTAGGTTAGGTTAAAAAGTGATCCTCTTCAGGGACTTCCCTGGTGGTCTGGTGGCTAAGCCTCTGTGCTCCCAGTGCAAGGAGCCTGGGTTCCATCCCTGGTCAGGAAAATAGATCCCATATGCTGCAAATAAAACCCAGTGCAGCCAAGTAAATAATAAAAAAAAAATGATCCACTTTTGATTCTGAAAAGATGATGTGCTCATACTTTATTCTTTAAAGATGATGGGACTTCCTGGGGGTGACAGACCTTCTCGAATCTCAGCTTCTAAGGCATCCTGCTCCAACCTTGGCTTTGCTGGGACCATTTCTTCTCCTGCTCAGGCACCTAGGGATGGGGGACTGTGAGCCCTGGGGAGCAGGTTCCAGGGCCCCAGCAATAGCTCTTGACATCCTGCTCTGCTTGCTGGCAG
Seq C2 exon
CGACCGGCTGGCCCTCCTCCAGGTCAGGAGGATCCTGCAGCAGCTCGGCCTGGACAGCACATGTGAGGATAGTATCGTGGTGAAGGAGGTGTGCGGTGCTGTGTCCCGGCGGGCGGCCCAGCTTTATGGTGCTGGCCTGGCTGCCATCGTGGAGAAGAGGAGGGAAGACCAGGGACTCGAGCACATGAGGATCACCGTGGGTGTGGACGGCACCCTGTACAAGCTGCACCCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033398:ENSBTAT00000047474:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0399610=Hema_esterase=PD(12.6=20.8),PF0372711=Hexokinase_2=FE(21.7=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAGTGGGATGTACCTGG
R:
CACGGTGATCCTCATGTGCTC
Band lengths:
344-973
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]