RnoINT0005125 @ rn6
Intron Retention
Gene
ENSRNOG00000049045 | AABR07045032.1
Description
NA
Coordinates
chr20:32020460-32026558:-
Coord C1 exon
chr20:32026379-32026558
Coord A exon
chr20:32020694-32026378
Coord C2 exon
chr20:32020460-32020693
Length
5685 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
TCTGGCCTGCTTGTCCACAGTGA
3' ss Score
8.63
Exon sequences
Seq C1 exon
TCTTATCCCCTCTTCCCCAAACAGGTACGAGAAAATGACCAGTGGGATGTACCTGGGGGAGATTGTGAGGCGGATCCTGATCGACCTCACCCGGCAGGGGCTCCTCTTCCGAGGGCAGATTTCAGAGCGACTCCGGACCAGGGGTATCTTTGAAACCAAATTCCTGTCTCAGATTGAAAG
Seq A exon
GTGATGTATGACCAGACTTATTGCTTTGTGTGGGATGCTGAGGGAAGGGGGTGGCTCCTCACAAGGGGTGGGAAGATTTGAGATGGGAAAATGAAAGCAAGACTGGGGATGTGGCTCAGATGGCAGGGTGCTTGCTCAGCCTGTGTGAAGCCCTGGGTTCGATCCCTGCATCTTCAGAAAGCAGGTGTGTGGTTTGCACCTGTTATCTCAGTCCTCAGGAAGTGGAGGCAGGAGGGCCAGGATCAGTGTTGGCTTACATGGCGAGTTCGAAGCCATCCTGGAGCCCTGGAGAAGGAAACAGAGAGAGTGGGCAGGAAAACTCCAGTAGCCATGGAGTTCACTCACGGCCACTCCATTGTCCATCCCCCTGCATCTGATCCCAGCCCACAGGACAGCATACTGCCTGGGGATAGATCAGCCCCAGGTCACTTAATTGAAAGGACTGGGTTCTCTACCAGGGTTCCAGAAGGATACCACAGGAATTAATTTAGGCTACAAGTTATCCCCCCTCTATTTTGAAAAGATGGTGTACCTGTGAGAAAGAAATATCTGGAAAAGGAAAATCACTCATGCGCTTGTTAACAAATGTGGCTACTTTGAGTTTTGTGTATTTTGTCCCCTCTTGGGTTCTTTAAGGTTTGCAAGCTTATCTGACACATGCCATCATTTTACATGTGATTTACATATCATTTATTCAGTGTTTAGTCATAGGGAGTTTCACTTACAATGCTCGGTTGTCTGTCTGTCTGTTTGTAGACAGGGTCTGATATGGCCCAGGTGGCCTCAAAGTTGCAACGTAGCTGAGTCCTGTCTCTACCTCCCAAGTGCTGGGGTTCCAGTATTTGCACCGTGCCTGGCTTCTGCTTCTTGTCTTACTATTTATCATGGAGGATTTCAAACCTCTTCAAAAGCAGAACAACGGTGAAGCAGACCCAGTGTTCCCATCGCTGTCCCTCACAAAGGTGTGGTCAGCTCCGTACCAGACTGCATCTGTCCCACACTCCCACTGGCTCGGCCTCTGGCTAGGTTAAGTTGGAACGGAGCCCACACCTCATGTCAGCTCATTTATAAATATTTCAAGATGAGCTCTAAAACAGAAGCCCTTTAAAAGGTCATAACCAACTACCATTATCATATCCCAAACAGCTCCTGTGAGCCCTAATGTCAGAAATACCTTCTCTGAGTTGTTCTTGAACTGTCAGACGAACACCGACACAGCAGTGCAGTCGTCTCGGATGCGTTAGTAGGCAAACAGGGCCCTTCTGTTTGACCTGCGTGCCTAAGATACGTTTTACTCCATAGGCGTTCTCTCTCTCCCTTCCTTGCTTTCCCTAACTGCACAGTCGCTGAGGAAGCCATATTTCATCCTCCAACCTTCCCGTATTCCAGACTTGAACGATTACAGCAGCATTCAGTTCTCTCCTTTGTCCCTCGGATCTCCTGGAAATCTTACATTCACCCAGGATCCCCGATCAGATTCAGTGTTGAATTTCCGTCTGTCTGTCCCTTTTCTATATTGTCACTGTTCGTCGATGTGTATGACGACAGTCTTGTGTTGCCGGCATTAATTAGTCAGAACGTTTCTCGAAAGCAGGCTTTCCTTTATCGACTGGCTACTGTGACGATCATTTTGAAATTCTGTATAAAACTTCCCTGTTACTATATTGTAATTTAGTATGCGACGCCAAGGTTATAATTTATGAATTTCGGTTATTCTGAGAAACACCATAATAGTTACTCTTTTGCACATAGTCATTTGCGTCTTATGAATTATTTACTTAGGAGTAGAAGCAGCTGACAAGTGGAGTACTTCCCTGAGGGTGCACTGCTTTTTTGGAAAGCGACTTTTGAGGCTGGGGATGTGGCTCAGTTGGTAATGCTTCCCTGGAGTGCGCAAAGCCCATGGTTCAAGTCCTCAGCATAGCATAAGGTCTGGCGGGGCACGTGTGTAACCTTAGTACAAGGAGACAAAGAGACGCTGAAGGTCATCTTTGGTCCTATAATGAGCTCTACAATAGTCTGGGCTATATGAGACTCTGTCCAGGGGCTGGGGATTTAGCTCAGCGGTAGAGCACTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAAAAAAAAAGAAAAAAAGAAAAAAAAAATGAGACTCTGTCCAAAAATAATGAATGAATGAACGAATGAATAGTTTTCCATCTCCACTACCACCAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTGTGCTGGTCCCAAGTGAAAAAAGCCCTCCCGGGGTCAGTAATGGGTGTAAAGAGAGACCAAGCCATACCTCTTATCTATGCCCTTGGGAGGCAGAAACAGGGGAATTTCTTTGGGCTACACAGGGAGTGCCAGGCAAGCCAGGACTTCATAACAAGACTTTATTCCAAAAATACAATTAAACAACAACAACAGAAAACAAATCCATCAGTGGGCTCACAGTAATGTCAGAGCACTCACAGAGGAGCTCCTGTAGGGTTCTTGCTGTCTGGAGAGCCGGCTGTAGAAGGTAGAGTACTGTAAAATCAGGGTCTAGAAAGACAGGGCTCAGGGGTTAAGAGCAGTGACTGCTCTTGGAGAGGACCTGGGCTGGGTTCCCAGCCCCTTTGTGGCTGCTCACCACTGCCTGTAACTCTAATTCCGGGGGATCTCACGCCCTCTTCTGGCCTCTGCAGAGTGAAAGCCACTCACACAGTGCAGCCAAACACATAAACAAAAATAATAAACTTTTAGAAGAAGAGGGGACGGGGAGGAGAAAGTGGGGGGAAGAGGGGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGCACCAGTGGTCTGGCATGCTAAGGAGCAGGTGTACCTGGTGAGATCCTCTGAGAACAGCTCAGTCAGCCTGACTTGCCTGTGCTGTGCTCTGTGTCCCCTCAGCTCAGAACAAGTCATTCTAAGAAGCAAGTATGGGGGTCGCCTGTACCTCAGCACCTAGCTGATGCAGGGGATTCAGAGTTTGAAGCCAGTCTGGGCTTCAAAGGAAGATCCCGGAGGGAGGGAGGGAGGGAGGGGAGAAGGCAGAGGGGGAAGAGTGTTCACTTTCTCTGTTGGTAGAATGCTTGCCTGGAATGTAGGAAGCTCTGAGTTCAGTTCCTAGCATCACAAGATAAATAAAAATTAAAAAGGAAGTGAAAGGAACAACATAAAAACATCCTATGACTAAACCAGGGTCTCAGGAGCTGTCTGTCTTTATTTATCTGTAGTTGTTCTGTAGCCTGACTGGCCCACTGTGTGACCCCTGCCTGGCCTCCAATCTGTTATTCTTTGGAGGGCTCATCAAACATACAACCTCACAGACATTAGCTTAGCTCAGTGCAAATTGCCTTCACTTATCAATGGCTCACTGTGACCTTAATTGGGGTCTAGACTTGAAGCTAGCTTGTCCTTGTGGTGCCATTTCTCTGTATATGTTCACGGTCCTTTCAGGTTCTTTTTTTTCTTTTTTTGTTTTGTTTTGTTTTTTGTTTTTCTAGATCAGGTTTTTCTCTCTGTGTAGCCCTGGCTGCCCTGGAACCCACTGTGTAGACCAGGCTGGTCTCGAACTCAGAGATCTACCTGCCTCTGCCTCCAAAGTGCTGGGATCGAAGGTGTGCGCCATCACCACCTGGTTGGTTCCCATTCTTTTAAAAAACAAACTTTTTGTTTTTGAGAATTTCATATATACATGTAATTTATTTTGATTAAACCACCCCCATTTCCTCTCCAGCAGTTCCTACCTCACCCCCTCCCAGGCTATTCCCTCTCCAGTTTCATGTGTTCTTTTTGAGAGAACCCACCAGGTCTATCCCATGCTGTCTGTATGCCCATGTGCGGGAGCATGGGCAGCCTTCCTGGGCCTCCATCCCTGAAGAAAGCTCTCTCAAGCCAATGTTTTCCAGCAGCCAGCAGTTGCCCACAACTCCTCAAGCCAAGGGGGCTTTGTGACCTCCTCTGCCCTCTGTGCTAAGCTTTACTCAGGTCTCGTACACGCAGTCACAACTGTTCGAAGTGGTGTGTGCAACTCTCCCGTCCTGTCCAGTTTTGATGTAGTAGTCATCCACTTCCTCTGGTTCATTCTGCCTCCTCCTCTGAGATGACACCTGGCCCCTGGGAGGAAGGGATGTGATCCAGATGTCCCGGTTAGGGCTCAGCTCTCAGCAATATCTATTCTCCCCGTGTCTTGACCAGTTGTGGATCCCTGGGTTAAGGGCTCCCATCCTTCAAGGTCTCATCATGTGCCATATATTCCTTTGTTGTTGTTGTTATTGTTGTTTAAAGATTGATTTATTTTATATATATGAGTACACTGCCAGTGAGGGCATCAGATCCCAGTACAAATGGCCATGAGCCACCATGTGGTTGCTGGAATTGAACCCAGGACCTCTGGAAGAGCAGTTAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCCCACATGTATTACTTTAGTCTCTTGACCATTGAACATCCCAGCCGTATGCAGTTTATGCTAAGAACATGTCTTGGTCTTCTAAGAGAATATATTTCACTGGGTTGACAGCACACACCTCTAGTCCCAGCACTGGCTAAGCAGAGGCAGGAGGATTATCATGACTTGGAGACTGAGCCGCAGAGTGAAAACTGGGCCAGCCAAAGGTAGAAACATAGCCTATAGCAAGAAACAGACCCCAAAAGGACAGAAATAGAGACGGAAGGATATTGGCTTCCAGAACGGGGAGAGAGCACCACAGGGGAGTCTAAAAGGATAACCCTTGTACCTCGAGCCTTAGACTCCTGAGAAATAGGCATCTGGTATATTGGCTGGTGACTCTGATATTAGCTCCTAGTAATGTGATCAAGAGTGTGCCCTTACATCTCGCTGTTTAAAGGCAACAGGACTGACTTCCTAGGGTGGAAGACTTTTCCTGTGTCTCTGACGTTCTGCACCCCCACTGTGGGCCTGTTTGCTGGAGGCTTTCCTCAGATATCTCTGGCCCGGCCAAGTGTGAGGGTTCAGGTGAAGGGGAGAGAGCTCGAGCAGGAAGGGGGATCACCTCGGCAGCCTCCACTGCCTCCCCTGCTGGTGCTGCACCACCTCTTTCTCCACCACTGCGGCTGCAGTTGCTCCAAGATGTCAGGCCAGCCGGGCTGAGCCAGCAGGAGGAGGACTAGCCAGGGAGGGGTGTAGGGCGATTTCAGAAGAACAGAGCTCTTCCGCCAGCAGCAGTGTTGCAGCTCTTATGACAGAAGCTGTCAGACGAAGGAGTGATTCTCACATTCCTTTGTTCCTTCTTATATACAGTTTTTGGATGGGTCAGTGTCTGACAGCAGGTACTTTCTGTTGGCTCTGCCTGAGAGCTTGGAGATCTACATGTGGGAGGGCTTGGGGTGCTGCTCCCACGTGACTGAGGGTCACAAACCTCTCTACAGGGGCATGTGGGAGGCTGTAGTTTCCTGGGAATTTAGGGAAAAGCTTACCGTCCCTATGGTCACTGGGGTTTCAAACCTCAGCTCAACTGGGATCCAGACCACCACCCCACACCCCAGCCATTGACAGGGCTCTTTAGGCTAAGGCGACAAGACTGGATCAGGTGAAGCAGGTCCGGGTGAGGGAAGCGGCTGCTAATGGTCTGGCCTGCTTGTCCACAG
Seq C2 exon
TGACCGGCTGGCCCTCCTGCAGGTCAGGAGGATCCTGCAGCAGCTGGGCCTGGACAGCACCTGCGAAGACAGCATTGTGGTGAAGGAGGTGTGCGGGGCTGTGTCTCGGAGGGCTGCCCAGATGTGCGGCGCCGGCATGGCTGCCATCGTGGAGAAAAGGAGAGAAGACCAGGGCCTCCAGCACTTCAAGGTCACTGTGGGCGTGGACGGCACCCTGTACAAGCTGCACCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049045:ENSRNOT00000074989:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.0=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]