GgaINT1014877 @ galGal4
Intron Retention
Gene
ENSGALG00000021039 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr6:10452754-10453799:+
Coord C1 exon
chr6:10452754-10452909
Coord A exon
chr6:10452910-10453565
Coord C2 exon
chr6:10453566-10453799
Length
656 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
CTGTGTTTCCCTTTACGCAGCGA
3' ss Score
8.17
Exon sequences
Seq C1 exon
ATACGAAAAAATGACCAGTGGAATGTATCTAGGTGAAATAGTGAGGCAAATTTTGATTGATTTGACCAAACAAGGACTGCTGTTCAGAGGACAGATTTCAGAATCACTCAGGAAAAGAGGCATATTTGAAACAAAATTCCTATCTCAGATTGAGAG
Seq A exon
GTAAAGTTCATTAATTTACTTGCTATGATTCCTCAAGGTCTTCTAGGACCTGTAGAAAATAATCTGAAAGTGTGGAGACCTTTCCTTCAAGAAATCAATGATAGTTCCCTCCTTTGTCTCCAAACCCTCAGCCTTCACCCAAATGATGAATCATCATCCACACAGCTATGTTGTCTTCAATGTCTTAGCCACTGAACACAACTGCACTTGGAATCTTTCTTTGTAGAACTTCAAATAATACTTAAAAATAGTTAACTACAAGTCAGTGTTATGTAAATGCCCCATGAATATGTGCTTACCTACTTATCTGTGCATGACTACAACAGTCCTCAGGGCTGTTTGAAACCCTTGCTGTCTCAGCCTTTAGGTCCAAAAACAACATGGTCAAGTGACTGATCTGACACAGCTTCCTCATGGCATTGGGAGCTAGGTGAATAACTGGAAATACAGTCTAACACAACAAAGAACGGGCCATGAGCAAGTTTGGGATCTGGACTGAAAACTGCTTTAAAACAATTAGAGGATGTGAGAACTGGAAGCAGTGGTCCCATTTCCTTTGAATAATGACAGAATCTCATCTGGAAGGCTTTAGAAGATTTGTACCTGCCAGAGCTTCCCATAATACTCTGACGCTGCCTGTGTTTCCCTTTACGCAG
Seq C2 exon
CGACCGGCTCGCCCTCCTCCAAGTCCGACGGATTCTGCAGCAGCTTGGCCTCGACAGCACGTGTGATGACAGCATCATTGTGAAAGAGGTGTGTGGGGCTGTTTCCAGGAGAGCTGCCCAGCTCTGTGGGGCAGGACTGGCAGCCATTGTAGAGAAGAAGAGAGAAAACCGAGGTGCGGAGCACTTGCAAATTACTGTTGGAGTAGATGGGACTTTGTACAAGCTTCATCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021039:ENSGALT00000006717:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAGTGGAATGTATCTAGGTGA
R:
CAGTAATTTGCAAGTGCTCCGC
Band lengths:
342-998
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]