GgaINT0046144 @ galGal4
Intron Retention
Gene
ENSGALG00000011068 | COBLL1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr7:19602002-19607809:+
Coord C1 exon
chr7:19602002-19602070
Coord A exon
chr7:19602071-19607550
Coord C2 exon
chr7:19607551-19607809
Length
5480 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
CCTTCTCTTTGTGAGCTTAGGTG
3' ss Score
3.62
Exon sequences
Seq C1 exon
TAACAGAGTCAACACAATCAATCCCTACTGAAGTGGAAGGAAGAGCTGCCCAAATGCAGTCTGAAACAG
Seq A exon
GTTGGTTTTTTTTTTTCCCAAATGTATCAGCTAAACGTATGTCATAGTAAACTGTTATAATTCATAATAATAAATTACTACACTGTAGATATAGATGTGTAGATAAGTACGTACCAACTTCAGTGCTTCAAATTAATTAACTTTTCAATTGAAAGACAAGATTTTCTATAATAATGATGTACAGTAAATTTTGTATTGATTTCTGTGCTTCACATTTAAGAAACTAAACATTGTCCTCTCTTTATCCACAACAGGTCAAGGTAAGAACAAGCTAGAATCTTGGTGAACTTTTGTATGTCCCATAACACAACGTTCAAAAGCTAAAATCCAGTCTTGTTTGCAGAATCCCATTGTGCTGCCCTTAATATGCGTAATCTTAGGGGTAGGAGAAAATCTGTGCTTGCTTTTTGGTTTGCATCTGAATAGCCTTTGAAAGCATAAGTTATAAATGTAACTGTCAACTGTGTGCATTCATAGTTCTTTATACATTATTTCATTTGTTGGGTGCTATGGAAAAATGTGATATATAAAAGTATAGCTATTTAAAATACAATTCTTTAGCTGCTAAACTATTTTATTGTAAGGTTTTAGTTTTCTTGTTTGTGCTACTAAGTGCTGCTGTTGGTAAGTAGAGTTCAGATACAAGATAGAGGATTTAAAAGTCTTTTAAAATTTTGTAAAGCATTTGGAATAATCAGTGCCAGTGCAATCTGTAAAAGTTACTCTTCTGTATGTTTCACTAAAGATGAAATACATGAACACTAAGCACGTGGAACTCCATGAGCAGTGTATGAGGTTCATGTATTTACTCAGTTCCTGTGCTAGTTGATAGGCGCTCTGATATATTAGTTTTCCAACTAGTTTATTGGAATTGTCAGTCAAAACGGTGGTTGGAGTGGTTAAGGAGGAAAAAAACCATAAATGCACCACAAGAAGAATAAAAAATGTCACCTGCTTCCATAGGTCTCTGGTGAAGGAAAAAAAATAGAAAGATCAGTCATCAGTAAATTCGGTGTCCACTTGTGACATTTAATAGAAACAATAGCAAGAAAACTCTTTGAAGAATAAAGCATATACTTAATAAATAGAAAGTATTAGCTTCTGTTGTGCAATCTGAATTTGAAAATATGATAAAGACACAAATATTGCCTACCTAGCTGTAGCAGAAGAAAGGTAGCGAATTATAATTCAGTGTATTATTCTTAATATTTATTAGTACTTAGTTTTGTGTTCAAAACCACATTTATCCACATGTGATGGATCTAACATGAAGAGCAAGGTTATCATTTAATATTAAGCTCTTTTGTTGTTTTCTTGAGCTTGTTTCTGTCTTAAGATAAGTAGATTGTTAGAATTTCTGCATTTCCCACAAGTGTAATATCTTAAGTGCTGCACAAATAACCTTTTTTTGAGTCTTGAGCTCAAAAAAGTCTTGAGCTTCTTAGCAATAGCTTGACCACTTTTCCATAGACTTAGTAACCTCTGTTTGAGGTATTTGATTTCTTGTGATTAAATATTTATTATGTAATATAGAAGGAAATGGAAAAAAATAATCGTCCTTATTGGGTTTAGAACAGTCTGTGTGAGGCTTGGGATTTACTTCCACAGTTACTGACATTTTTCATTCTCTAGTTCTGTTTGTGGTATCTTGTATTCCAATAATGTCCTTTGCTAAAGACTTAGTGCAATGCATTTTTTTAATGTAGAGATGAGTTACGTAGCACAGCCTCATTTCTTTTTGTTTGTTATTTCCTCATGGGATACTGCTGCTCTCTGGTGGCATCTCTGAAACTGTCAAGAGGCCCCTTTATAAAGGGTCCTTTTAGTACGTGCTGTGAGAACCAATATTCACCTGCAGCAAAACAAATCTTGCGACTCTTGAGTTAATCCTAGTCTGAAAATCATGTATCAAATTTGGGTGCTTTTTAATAAAGATGAGATAGAATAGTCAGTATCTCTTCAATTGTTAAATTGGATATAATTTTAGCATTAAATTAACTCAGTAGTATCCTCTGTTTTTGTTAATACTACTTGAAGTGTCAGGGTTCCAGAAACATTGAGTTTTTGATCAGCTGTGACTAACATTCTCAAAGCAGTTATGTTACACATTTCTCCTTTAGCAAATAAGTAAGTAAATTTAGGTTATGAAAGTAGAGTTACCTTCTGCCCTATAATGAACTATTGTGAGCATTCAGTAAGGGTTATTTGGTGTCTTAGTATTGCATGGCTACTAGCGCTGTGTACATTAATTGGAACTATGCCGTATAGTTCAGAATAGGCAACATTTGAAAACAGACTGCACCTTGACAAAAGTGGTATGAAGACATCTAACAGAATAAACATTAAAAGAGAATTAATTTGAACATTTGGAATTATAAAGAACAATTTATTCTCAGTTATATTTTTTTGTTCCCCTTCCCAAAGCTTAATGAATACTTTTTCTTTTTTTTTCCTAAGGGAGAAGGTGAAATTTTTAAAAGGAAAAAAGCTAAAGATTTTTACATGGTCTCCCATTAAACAAATCACTTGATATTATGTTCTTGATTACAGATTCTCTTACAAAGCTTTTCAAGGAGTATTGGGCTGAGCAAAACCACTGCCAGATTTACATGATGTAGTCAGGCTTTCTGGCTTTGATATTTACAAGTGTAAAAAGGCATGGACAGAAATGTCATTCTGTTATCTGTTGTATTCTTACAGGCTTAAAGGACACCTTGCAGTTGGTAAAGCAGTCACCAGGTATTCACAGTGCCATCATGTAGATATTAACAATGTTCTTTTAGAACTATTTAAAACTCTGTGACTAATGTTCATAGAGAATAAATTGCACAAGACAAAAATGCAGTTTATGTTATGTACATATTTACATAGAGAATACATAGGCAATAAGGGTGTAATGTGTATCCAGTGTTGCCATAAGTAATTCTTAGTGATATGTTGAATATAAAACTCTAAATGAAGGATTTGGAAAACAAGTCATAAAATCCAAACTGTTCGTATGCGTGATGTAAATGAAGGATGGCTGTCACATGTTGTGAATGAATGCTGCAGCACTGGCGGCCCAGATCTGCTAGTAACAGCTACAGACTTAAAACTGCTAGTTGTAACTAACTCTAAGCAAGTCTGATACTGTGCTGACAATGCGGTAGAGAGAGCACTTTATAATTATAAATTATGTAGGTTTGCTTTTTGTTTTTGTTGTTGTTTGGAATTATACATTTTTAGTTTAGATTTGGAAGTGATCTTAGCACAGCAAGGGATGGACTTTCATGTAAGGTGAAAGTCAATAGGATCTCCTACCCATCCAAGCTAAGTTCCCATCCCATCAGTATAGGAATAGAAACTTAGTGTGCTAACTTCACCTTTGTTATACTTCTTCTGAGCAAGAATGACAGAGGTGACTGCACTGACTAGCCATAAAGCCATAGCAATTCCAGAATTATTCTGTTTGTCTTGTTAGAAGTCCTGGCTGTGCTTTATTGTATAAGTCAAGATTCCACAGAGTATTAGACTGGAGGTCAGTCTTAGTCTTTGTTTTATGGTTCCAACAACATTTTGGTTGTTGATGGCTCAGGGTCCATGGCATTTAGGAGCTAACCTGAGCCTCTCAGATGCTGCAAGGCCACTTACAAATTGTAATAGTTTTCCCTCATTTTCAAGCATAGTAGTTGTCACCTGTGAGGAAGATGTGGTCTTGAGAGCTTGTGAGTTAGTCTCAGCAGATTTGATATTTGCCAGCATTCTGCTGTCACTGAAATCTCCCAGGACATTTGGCTGCTTGTATGATTTTACCCCAATTTAGAGATCAAATAGTTGTGGGTGAGGGAGGGAGGAAGAGAAAAGGGCCTTACTGGTTGTGAACTCTGAAGGAATCCCTTTGCTATCAACACGTGTGCGTAAGCAGTGTGGAAGGAGGTTCACTTGCACCATTTTCCAATCTTGCTCCTCTTTCCTTGGAGATCTATATTACCTCTATGCTCAGCTCCATGGCTTATTGATGAGAGTGCTTAGTCTGCAGCTGCAAAGCATTATTACAAGAGAGCACTGTGAAAAACTAACTAGAATTAAATAGTAAAATTTTTGACTTCAGTAGTTGCTCTGCAACTGTGAATGAGTTCAGTAACACCATTACTGAACTCTAAGCTAATGACTGTGCTGGAAAAAGAAATGTTTTTGTTCTCAGTGAAGACCTCCAAATCACATACAGTTCCCTGTTTTTATTTTCTTTCTTTAGTGATACTTCTTTAGAAGTACTGGGTCTGCTGCAGGATAATGTTTTGTACAGTAAAATCAGTCTAACGTGTTTTTTGTTAAAGAAATATGCTCTGGGTTCTGCCCATTTCTAGGATTGCTTGCTTCAAGCTAGTATTTTGTTTTCAATCTTAGCCTTTTTGTAGAGTTGGATTGCGCTTTGAAACTTGCTGATTCAGCCCACTGCAAGGCCTGTACCTAATAGGTATTGATGTATGCAAAGCTAACAGGAATACTCTGTTGAGATCAGAATGCACTGCTCATATGTGCCTCTGTTATTTCCTGTAGCTATCCATTTCACCATATTGCCATATACAGATGAAATTATTGTTATGTTGTTTGTTTTGCAGAATGCGAGTTGCAAAGCTGAGAGGTTAATTGTATGGTCTACCCACTAATACTTGACAAATGTGAATCAGCATCTTGGTGTAGGAAGATTCCTGGCAGGAAAGTGAAGCCAGAGACAGTCACTCTGGAAATCAAAAATACTAGATTTATTAGTCTAACATCAGTTGCACTGTCTTCTGTGTCCTAAGCCAGTAACTAAACCTTTTTAATTATGGTCTAACTGAAAATTCCGTTATGCTTTTCCACAAATTCCACATGCTTTTCCATGTATTATTTATTTATTTATTCATTTTTGCACAGGGCTGTGCACAAAACTCATCTAAATATGTTTTGATATTCTTGGGTTGATTATGGGAAAATTTTGATAGTGGTGAACAAGCTTGTTCAAAACATGGACTAAGTTCAGATTTGGTTTGATTTTTAGTTCTCTTATGTACTTACTCTGATATAAAGGAACCATTTATTTTAAGCCTTATTGGAGAGCTAATGAAAGTTGTTAGAAATCTGTGTGAAATAAGCTGTCTGCCTTCATGATATTTCTTACATATATTTTTATCCATAGTAATTCAATTCTTGAATTAAACGAAGGAAAACATTATGCAGTAGTTACAGATGCAGAAACACACGGACAGTGGCATGATAATAAGCATATCTTCATGTAAAAAGAGAGATTCGAGCTAGAAAATACTATGAAATTGAAACTGATTCTTTTTATTTTCCTTTTTTTTTTTTTTCCCCATCTTCCCTATATTACGGAGAGAACTCTCAGTTTTCCTTCATCAAACTGCTTAGGCTGGCTTCACAGTCCCTTTTTATCTATACGCTGAAGGTGCTGAAGGTGTGTTTCCTTTTTTTTTTTTTCCTTCTCTTTGTGAGCTTAG
Seq C2 exon
GTGCAAGGACATCAGAATACAGTCTGGAAGAAATTGATGAAAAGGAAGAGATGAGTGTGCAAGAGGGAGAGGAAAGTGGAAGTACAGGTACCTCTCTCAGGACAGGAGAGGCTACTGCAGCCTTCAGCTCTATGGAGGTACCTCTGGAAACTGAAAGAAATGATTGTGCTTCATCAGTTCCTGTTCCTGGCACTGTTTCTGTAGACAACTCACAAAGCTTCAAGGAAGAAAAACAAGAAAATATGAGCACAGATGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011068:ENSGALT00000018021:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]