MmuINT0038653 @ mm9
Intron Retention
Gene
ENSMUSG00000034903 | Cobll1
Description
Cobl-like 1 [Source:MGI Symbol;Acc:MGI:2442894]
Coordinates
chr2:64941217-64943885:-
Coord C1 exon
chr2:64943772-64943885
Coord A exon
chr2:64941452-64943771
Coord C2 exon
chr2:64941217-64941451
Length
2320 bp
Sequences
Splice sites
5' ss Seq
CCTGTAGGT
5' ss Score
3.22
3' ss Seq
CTGTCTGCATTTCTTTGTAGCTG
3' ss Score
9.07
Exon sequences
Seq C1 exon
AGGGCTCCCTTGGTCCCGGGTTCCTAAGCCAGGAGCAGTGTGCTGTGCCCAAGCCGCCGGATGAAATCTCTGAGGGCCCTGGAACTCCAGAGGCAGCTGTAGCATCCTTGACCT
Seq A exon
GTAGGTGCTCAGGCTGGAACTGGCTGGGGCTTTGTATAAGCCATCGAGTATAGATCAGATTGCTCATTACATCCTGTAAAGTGTTCCATAAGTAAATATGTGCACAGTTCCCTCTTTCCCTTGAAGTTTTATCCAGGTCTGAAATGTGCTGTTTTCCTGAACCATCTAAACAAGCAGGGCAAAGTGTAGAGAGAAGCCACTCCGCAGCTCTGGGGACCACTGCTGCTTGTTTTTGGCTTTCTACCATTCTCAAGGGCTGCTTGATCTTTATTATGATCAAGATGAATATGTAAGAGAATGTTTACATAGAATATTTATACTTATTCTCTGCTGAACTCTACCCATTTGCTGCGTGGCTTATTTTCTCTAACATATTCTCAGGTGCTTTTCCTCTTTTAAAAGTAGAATTCCAAAAAAAAAAAAAAAAAGCCAGGCATGGTGGCACAGGCCTTTAATCCCAGCACTCGAGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAAACAAAACAAAAACAAAGAAAAAGTAGAATTATTTTGTTGTAAGATAGCACAATATTATAATTATGATACTCTGATCTCCTCATAAATTTACTCATTTTTAAAAACTCCAAAAAAGCCCTTTATCCTTTCAACTTAGTCGCCTAAAATTAGTATACTATCTCATGCTCCTTGTAATCATGCAAAATTGTTTGAAGACTTTGGCAAACAGTTTGATGAGGATTTTGAGATGAGTAGAGATTAATGCCAGGCCGTTGTGCTAAGGGAGAGATCTCCCAATGTGCTACAGCCTCACCCTTTGGCAGGGTATTTAACGATGCAATGTGCACATGCACTTTCTATATGACACAAGAAGCCTTGCCTGTGGGTATTTCTGTTTTTCAAGAAAAATGAAAGCCACACGAGTACACACAGAGCGCACAGCGTTACAGATTCCCTATTGGTCATTGCCTGCAAAGGGGAAAATACTCAGAGGTTTCTAAACTGTAAAACAGAATTAAGGTGTAACCCCTCCACCCACACAGTGCAGTGGTGACTAGAAAGAGAAGCATGTTTCGGATTGACTTAATAGAATTGTATTTACCAGAGGCATAGGATCTGAAATACTTTCAGACTGTACCTGCCTCTGTCTTTGGAGTGCTAGGATTAAAGGAGCATGCACCAAACTTGACATTCGTTTTGTTTTGTTTTGAGGTTTTTGTTGTTTTGTTTGAAAAGGGTGTGGCTGTCTTGCTCACTTTAGATTAAAGTTCTTAGGAGAAATCATTCTTTTGCCTCAGTCTTCCCAAGAGCCATGTTTCTTTCTTCCTTCCTTCCTTTTTTTTTTCTTTTCATTCAGATTGATTGATTTATTGCTTTTGATTGAGACAGGTTCTCTCTCCAGTGTCCTGGAGCACACTGTAGACCAACCTGGTGTTGAATGCACAGAGATCTGCTTGACTTTGCCTCCTGAGTGCTGGGATTAAAGGTGTATGCCACCATACCTGGCTCATATTATTCCTTAGAGATCAGAAGTTAACACACTCTCCTGTCTCAAACTAAAAGTAAATGTCTGTGTCAGTATATGCATGGTCTGACCACTGTAGCAGTGGTATATGACCCTAGTGCCCCACTCAAGGTAAAGCTAAACTTCATTCAGACGCTGTTATGTCAATGGAGATGTTTAATTTGTTTAAGCAGAAATCAAGAACCTTGTGTATTCTATGACGTCCACAGTTAATCTTGACAAGAACTTTGAGTACTTAGCTGCTGGAATGTTTCTCCCCCTCCCCCTTCCCCCCTCTCTATCTCCCTCTTCTCCCTCCTTCCCCCTCCCTCCCTCCCTCTCTCGCTCCCCCCATCCTTCCCTCCCTCCCTCTTTGTGTTAGTGTCTGCTAGTAGACAGTACAAAAAACTAATATATTATTAATTTGAATTTTAAGTTGTTAATTTGTTTAATTCACATTATGTGACTATAAAGTAACTAATCAAAGGTGTTCATTCGTAAATGCAGTGATGTGGGGTTTGTAAGGTTAACCTTTCATGAACAAAGCCCAGAGTGATAAGCATGGTTCTAGAATGGTGGGACTGTGAGATCACTTGTTTCCTGTGTGCATGTAGCATTCACCATTAGGAAAGCATTTACTATTACTTTGGAACCACATTTTACAAGTCTAGCTAATTATGACTATAATTAGATAGCTAGGATGCTAGATTGCTTAGGGTGAGCAGGGCAGATTAATATTTAGGATTCTGTCTGCATTTCTTTGTAG
Seq C2 exon
CTGGTGTAAGCTCTGATTACAGTCTTGAGGAGATAGATGAAAAGGAAGAACTCAGCGAGGCATCTAAAGATCCGGCTGGAAGTATTTCTGTGAAGTCGCCTGACATTGCTTCAGCATCGACTGATATGAGAATTACAGTGGAGAAGGATCCTGATTCAGCCCTCGGCATCAGTGATGGAGAGACCTCTCCAAGCTCCAAGGGAAAAACTCAAGAAGGCAGAAGCACAGAGGGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034903-Cobll1:NM_177025:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: