GgaINT0046170 @ galGal4
Intron Retention
Gene
ENSGALG00000012156 | DPP10
Description
dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:HGNC:20823]
Coordinates
chr7:28696879-28698800:-
Coord C1 exon
chr7:28698746-28698800
Coord A exon
chr7:28696979-28698745
Coord C2 exon
chr7:28696879-28696978
Length
1767 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
AACTGTATGTCCATTGTTAGGGG
3' ss Score
4.14
Exon sequences
Seq C1 exon
ATCATTATTGAAACAGCCCTTCATTGATCCTAAGAGACTGAGTATATTTGGAAAG
Seq A exon
GTAATGTGTGAAAAACAGTGGGATGTATCATCATGATTCTTTAAAAGAATATTATCAGTTCATAAAAAAAATACATTTATGTCTTTTCCTAAGACAATTCCAGTTGTTAAAAGAAGCGTGTGTGTCTGTGTGTCTGTGTAGGGGTTGAACTGCCACAATTTACTTTATATTCTGTGTTTTTTTTTTCTTTTCATAATAGGTATTTGAGGTTAATCAGGTTGGTTTTATGTTACTGCAGTATTTGCTTTCCAGAATCTGCAGGAGAGAGTTTTGCTTTCTGCTTTCATTTAGCAATTTTTAATATGCGCTTAGTGTCTTAAAAGCTTGGGTCTTGCACATTTGGACTGCAGTTAAATTGACTGTTTCTTTCTAATACAGCTTTTATTTCCAAATATTCTACTAGCTGCCTCTACTTTCAATTGAAGATTCAACAGTTTCCTAACAGTGACATGGCAAGCAATAATTACCACAGAGCACACATGTAAACATAGTTGTGCTTTTCTGTCAAAGGCTAAATTGAATTTTTTTTTCCTCTTCAAAATATTATTGATGATTGCATGTCTGCATTTGTTTTCTGAAAGAAGGAGAAATTAGAAGTGTAAATGTGTGCAGGTGAAGAGCAAGAGCTGGGGATTTGATAAGCTTCAGTGCTGCTTTGAATTCAGAGAAATTTACCCTTTCCGAGCTAGTTAACCTCTCAGAGTTATATTCTACTGACAAAAATTCATAAAATAGATAAGTCAGTTTTAGAATTAGGATATGTATGGATAAATATAGATATACTTAACAGCTTCCTAGGATCAATTGTATTTTACCTTTACTCTGCTTATTTTAGAGTCAGTTATACATCTTTAAAACTCATTTCCTTTCAACCGTATACCACAATGTGATAGGAAAAGTGGTTTTTTTTTCTTTTGTTCTATGCATTAATTTGAGCTTATTGATGAAAAAAAATGTGCGTTTCATGAAAATAAGATGACTTTAGAATTGCTTAATGCTACTTTCATGATGCTGGGCTCATGCACACTGTCACGGAGCTCTCTGAGATGTTCTGGAACTACGCAGAAGTAAAACTACTGTTACAATCAGCATGCTTCCATTTCGTTTGCTTCTTTTGTGTGTTAGAACTTCACATGCAACCAGCTCCTTGAAAATAGGGCAATTGGGTGGTAACCACTGAAATCCAGTCCATGAGTGAGGGACCATATATTCTTACATCAGGACAGGGAACTATTTTCTGCACCATCATACCAAAGCAATTCTGAAAATGCGGTTTCACAGTGTAATGCTTTTGTCCTGGAAAGCCTGGCTGGAAGTGAGGGCATAATCATGAAGGAAAGAAATTCCTAGGAGAATTAAGCCAAGCTCTTAATAAATATATGCTATAAATAATAAACAATGTGGCAATAGCTGTCCTAGGATTAAAACTGTGAAGCTACTGGAAAAGATACAAACAGAATATTAAACAACACAGAAAGTAGATAGCACAGAGGAAGAGAAGAGTTGCTGTTCTCTTATACTCTTTGAATTATGAAAGGTATTGCTGCTCACTTAAATTTTTTTCTTGACTTAAATTTACTCCTGCATATGTACAGTGCTGGGCTACTCTTGGCCTCCCGGTCTGAAATTCCTGTGGGAGAGAGGATAGCCCAGGTAGTCAGGTTTCCCAAAGCCTTTTCTTCTTTGTTTGGTTTTGGCTACTAGTTTTTGTTGTTCCCTTCCCCCAATAATTCTCAGATCTCTTATTAACTGTATGTCCATTGTTAG
Seq C2 exon
GGGTACGGTGGCTACATTGCATCAATGATTCTGAAATCTAGTGAGCGGCTTTTCAAATGTGGAGCTGTGGTGGCACCAATTACAGACATGAAGTTATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012156:ENSGALT00000019852:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(10.2=100)
A:
NA
C2:
PF0032616=Peptidase_S9=FE(18.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]