GgaINT0046224 @ galGal3
Intron Retention
Gene
ENSGALG00000011132 | O73664_CHICK
Description
NA
Coordinates
chr7:23348951-23349358:+
Coord C1 exon
chr7:23348951-23349031
Coord A exon
chr7:23349032-23349273
Coord C2 exon
chr7:23349274-23349358
Length
242 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
TTCTCCCTCTTCATTTTCAGGAA
3' ss Score
12.75
Exon sequences
Seq C1 exon
TACATGCCAGCCACAACAGCTATGCAAGGAGCCTACATACCCCAATACACACATGTCCAGACAGCAGCGGTTCCTGTTGAG
Seq A exon
GTCAGTATATGACACAGAATACCAGAGATGAGAGATACAAATATACTATTTTAAAATTATTTCATTTGTATTATTTTTTGCAAGGAGTATTGCCAGCTGAAGTGCTGTAATCGTGCATGTACTCTGATGTATTTGAAAGGCTTTAGACTTGAAGATGTAATTGCAAACATTGCATGGCAATACAGATTGCAGGTAATGCTGTCTGCTTTCATCTCACATCTTTTCTCCCTCTTCATTTTCAG
Seq C2 exon
GAAGCCAGTGGTCAACAGCAGGTTACAGTAGAGACGTCCAGTGACCATTCTCCGTATACGTATCAACAAAATAAGTAACTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011132:ENSGALT00000033119:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCAGCCACAACAGCTAT
R:
TTGTTGATACGTATACGGAGAATGGT
Band lengths:
148-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]