HsaINT1028992 @ hg38
Intron Retention
Gene
ENSG00000153250 | RBMS1
Description
RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]
Coordinates
chr2:160275630-160277383:-
Coord C1 exon
chr2:160277303-160277383
Coord A exon
chr2:160275715-160277302
Coord C2 exon
chr2:160275630-160275714
Length
1588 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
3' ss Seq
TTCTGCTTTGTTTGTTGTAGGAG
3' ss Score
10.08
Exon sequences
Seq C1 exon
TACATGCCTGCAACGTCAGCTATGCAAGGAGCCTACTTGCCACAGTATGCACATATGCAGACGACAGCGGTTCCTGTTGAG
Seq A exon
GTTGGTAGAGACCATCCAGTGACCATTCTGGCTATAAGTAGTTTCAGAAATGGGTAAATTAAATAGAACTCAGAAAAATCTACCAGACGTCAAATATTTGCATAAAGAATTGCGTTTAGCCAGATGTGGTGGGTCATGCCTGTAAGTCCAACACTTTGGAAGGCTGAGGAGGGAGGATTGCTTATGGTCAGGAGTTAGAGACCAGCCTGGGCAACATAGTGAGATCCCATCTCTACAAAAAATAAAATTGTTTGAAAATTGGCCAGACATGGTGACATGGACCTGTAGTCCCAGCTACTCAGGAGTATGAGGCAGGAAGAACCCTTGAGCCCTGGAGTTTGCAACTACAGTGAGCTATGATCATGACAAATTAGGGTAACAACATCCAGGCCACACCTCTTAAGACTCCCAGAAATATTTTCTAAGCCTATAGTGCCTTTCATACCCCTCGGACGTTCTGTCTTGTCTCTCATAAAATGATACTACAGACATAATAAGATAAATCTGGAGTTTGCAGTCCCAGTACTAAAGATCGTATCAATGATAATTAATAATGACGAAAAGAAATCAGTTGTAGTTAAGATACTTAGTGGAAAAGAGAAAGCTGTTTTGAAACTGCTACAGGGATGAAGAAGAAGCTATAGCTGTTTTTACAGAGGCTGTTAGTATGGCTAGATAACTGTTCTTGTTATGGAAGATACTGATATGAAAGAAAGAAGTCTAGCATTTGAATTATGGTTAGAGAGAAAACGTGGCATTTTCCTGCAAAGTATCCTTAAAATTTCAAGGAAATGTATCAATCCAGTTGATCTTGCCCACTAGGCAGATCCCAAAGGTTCCAATTCCAGGAAAGGATCATAGGACTCTGGCCTGTTGGTGGAGGTGGTGGTGGTGGTGGTGATAGTAGTAGCAGTAGTAGTAGTAGTAGGTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTAGTATTTTACTTCTGTTTGTGCAATTACTGACAACCACAGTTACCAGAGCCTACAATTCCTTACCTGCAATCTGAAACCCAAAAAGAAATCTGAAAATAAAAATTATCTTTGTAACTACTTTAGCATAAAACCTGACCTATGGCAAAACTCAACCTGAATTGAGATGAGACAAAATCTTGATCCCACTTAACTGTGCTGCTTCATGGCTTCCAGTGTAGAACTATTAATATGTTTGCTTATGAGGTGCAGCCCTAGACCCTACTGGAGGCATTAAATGATATACAGCATATGCATACCACATTTCAGATTATAAAATCTGAAAATACTGAATTCCAAATCACATCTGTCCCCAGGGGATAAGAGGGTAAGAGATTTGTTTGATATGCTGTAGCTTGATAAGAATAGGAAAGTCATAAACATTTGGATGGGAGGTGCTTTGGGTCTGTTAGACATGCCAGCTGCTTAGGGAAATGATTAACCTTGAAAGCTCTACATGACGTGAAGAAATTTACTTTAAAGAGTAACTGTTTTTAAGGCACTGTTGGATTCAGTCAGGCCTAAGTAGCAGAGCTGAGGTTTTTTCACTAACATGTCTCATCCATTCTGCTTTGTTTGTTGTAG
Seq C2 exon
GAGGCAAGTGGTCAACAGCAGGTGGCTGTCGAGACGTCTAATGACCATTCTCCATATACCTTTCAACCTAATAAGTAACTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250:ENST00000348849:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains