RnoINT0125310 @ rn6
Intron Retention
Gene
ENSRNOG00000008482 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:RGD Symbol;Acc:1307777]
Coordinates
chr3:46804371-46806062:-
Coord C1 exon
chr3:46805982-46806062
Coord A exon
chr3:46804456-46805981
Coord C2 exon
chr3:46804371-46804455
Length
1526 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
3' ss Seq
TGCATTCTGCTCTGTTGTAGGAA
3' ss Score
10.08
Exon sequences
Seq C1 exon
TACATGCCTGCAACGTCAGCCATGCAAGGAGCCTACTTACCACAGTACACACACATGCAGACTGCGACGGTTCCCGTTGAG
Seq A exon
GTTGGTATAAAGCACCCCAGTGGCCTCTGTGGCAGTGGGCACTTTTACACCTGAGTCATTTAAATAGAACAACAAGAAAAGGTTGGGGCCGAATACCTTATCAAGGCACCGTGTCACATGCCTGTTATCCCAGCACCAGAGAAGACCAAGCGAGAGGATGGATGAGTTCAGGCCAGCTTAGCCTACATAGCCAGACCATCCTTCAGAGAAGGAAAAGCGAACAAACATTTACATAAGGCAGGGAGTGTAGAAAGAGTAGGCACTTGGTATTATTCTTCGACTGTAGCATGCTCTCCCTATGCAAATTAGTGTTAGCAACACCCAGGCCACATAACTCTCCGATCTTGTGGTATATTCCATACCACTTCGAGGCCTGTCTCGTAACCCCGGGATGATACCTACAGGCACAGTAAAATAAAGTTGGGAGTTTGCAGCTCTAGTACTAAAGATTGAATCTGTGAGAATAGTTGCAGAAAGAGACCAGTCCTAATCCAGATAATGGAAAAAGAAAACTTTGCATTTATAAATTGTAACAAGCGTTTAATACCATACTGCTTCTATGCCTAACCACTCTTCATTATTGTTTTGGAATATAGTGTATTTGAGGAAGTCTTAATACCTGAGTTACGGTTAGACAGGAAGCACAGCGTTTACCGTTGTCAGTCCAGCTATCTTCTTACCTAGGAGGCAGGTGCCAAGGGTCCCCGAGAACTGTGGTTGTATTATTTACAGGATCACACAACTTTGAACAACAGTTGCCTGAACCCACAGCTCGCTGTGTGCAGTTCTTCACAGCGGGAAACCTCCATAACAGCGGGAAACAAGTATTTTCCCTGTGGCTGCTTCAGCAGAGCCTGACCTCTGGCTTTTCAGACACAGTTTGAACTGAGACAAGGCAGAATATCCAAAGGGCTTTTGCTTGTTTGTTTGTTTGTTTTATTACTGATTTATTCTAATTTTAGTAGCGGTTCAGTCGAGGCCTCTCACGTGCCAGGCTAGAGTTCTACCACTGCGCTTTCTCCATGTCCCCTTTAAAGACCTTACTCTAAGCCAGGCAGGCTGTGAACTTGTAACCCTTCTGCCTTCCATGTTAAGTCCCTGAGGTTACACTTTGCACTGCCGGGCCCGGCTTCCTTTTACTGAGTTGACTGACATTTTTATCACATAAGTGTTGAGGTATAACTGATGCCTGTGGGGGGCTGTGACACACAACATGTGCACCCCGTGTCTCAGACTCCAAAAACCAAAAATAACTGCATTATAAATTTTATGTGGCTCCCAGGAGATGAAGCCAGGAGATCTCTTTGATCAATATTTAAGTCAAACATTTGGACGGGAGGTTCTTGGGGTCTGTCCTATTTCATCTGCATTAAGGCAGTGATTAGCCTTTAAGAGCTCTATCCGACTCTTTAAGAAATTCGCTTTGAAGAATGTCTGTGTTAAGGTGGACGTCCTTGGACTCAGGCCTTAGCAGCAGAGTTAAGATTTCATTGCTAACGTGTCTCATGCATTCTGCTCTGTTGTAG
Seq C2 exon
GAAGCAAGTGGCCAGCAGCAGGTGACTGTGGAGACGTCTAATGACCATTCTCCATATACCTTTCCACCCAATAAGTAACTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008482:ENSRNOT00000011682:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]