RnoEX0074746 @ rn6
Exon Skipping
Gene
ENSRNOG00000008482 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:RGD Symbol;Acc:1307777]
Coordinates
chr3:46803355-46806062:-
Coord C1 exon
chr3:46805982-46806062
Coord A exon
chr3:46804371-46804455
Coord C2 exon
chr3:46803355-46803651
Length
85 bp
Sequences
Splice sites
3' ss Seq
TGCATTCTGCTCTGTTGTAGGAA
3' ss Score
10.08
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TACATGCCTGCAACGTCAGCCATGCAAGGAGCCTACTTACCACAGTACACACACATGCAGACTGCGACGGTTCCCGTTGAG
Seq A exon
GAAGCAAGTGGCCAGCAGCAGGTGACTGTGGAGACGTCTAATGACCATTCTCCATATACCTTTCCACCCAATAAGTAACTGTGAG
Seq C2 exon
ATGTACCGAAGGGAGTTCTTACATGAAGAAGGGTGTGAAGGCTGAACAATCATGGATTTTTCTGATCAATTGTGCTTTAGGAAATTATTGACAGTTTTGCACAGGTTCTTGAAAACGTTATTTATAATGAAATCAACTAAAACTATTTTTGCTATAAGTTCTATAAGGTGCATAAAACCCTTAAATTCATCTAGTAGCTGTTCCCCTGAACAGGTTTATTTTAGTAAAAAACAAAAACAAAACGGAAAAAAAAAAGGAAAAAAAAAGTCAAAAGATTTTTATCAAATATAATGATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008482_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATGCAAGGAGCCTACTT
R:
ACGTTTTCAAGAACCTGTGCA
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]