GgaEX6042603 @ galGal3
Exon Skipping
Gene
ENSGALG00000011132 | O73664_CHICK
Description
NA
Coordinates
chr7:23348951-23352391:+
Coord C1 exon
chr7:23348951-23349031
Coord A exon
chr7:23349274-23349358
Coord C2 exon
chr7:23352137-23352391
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCTCTTCATTTTCAGGAA
3' ss Score
12.75
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
TACATGCCAGCCACAACAGCTATGCAAGGAGCCTACATACCCCAATACACACATGTCCAGACAGCAGCGGTTCCTGTTGAG
Seq A exon
GAAGCCAGTGGTCAACAGCAGGTTACAGTAGAGACGTCCAGTGACCATTCTCCGTATACGTATCAACAAAATAAGTAACTGTGAG
Seq C2 exon
ATGCCCGGTGTTGACCCGGCCTGGAGAAGGGTGCAAAGGCTGAAACAATCATGGATTTTACTGATCAATTGTGCTTTAGGAATTATTGACAGTTTTGCACAGGTTCTTGAAAATGTTATTTATAATGAAATCAACTAAAACTATTTTTGCTATAAGTTCTATAAGGTGCATAAGAAAAACCTTAAATTCATCTAGTAGCTGTTCCCATGAACAGGTTTATTTTAGTAAAAAAAAAAATTTTTATCAAGTGTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011132-'25-21,'25-19,26-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAGCTATGCAAGGAGCC
R:
AGAACCTGTGCAAAACTGTCA
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]